Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1532 ATGGATCAATACGACGACGGAGGAACAACAGACCTCAGCACCAGCGACCCCGACACAGAGAAAGACCAGCCCGAAACAACCAACCTCAATGGAGTCCCCAAACAGCGCAACACGTTCGAGCACACCACAGGCTTCCAAGTCCTACCGCTGAAGGAGGAGCCAACCGATTCGGAACCCGACCCGGACCCGAGGCTGGGGATTGTCCCGGTGGCGATGCCGGTCCCCTTACCCGTCCCGGTCAAACCGGCGAGGCGCTCCTCCGCCAGGGACCGCCACACCAAAGTCGAAGGCCGAGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAACTCACCCGCGAGTTGGACCACAAGTCCGACGGTGAAACCGTCCGGTGGCTCCTCGAGCACGCCGAGCAGGCCATTATCAAGGCCACCGGCACCGGCACCGTTCCGGCCATCGCCGTCTCTGTCGGCGGCGCTCTGAAAATCCCAACGACGTCGTCGTCCAGCGCCGACCACGACAACCAGGCTGAGAAAACGCCCAACAAGAAGCGGAAGCGCCCCTCCAACAGCGAGTTCGTGGACATAAACGACGCCGTTTCGCAGTCGTCCGGTCTGGCCCCGGTTCATGTGCCGCAAGGTCTGGTCCCGGTCTGGGCCGTGGGTAACCCCAGCATGGTGGTCCCCTCTAACACCTTCTGGATGATCCCGCAAGCCGCGACCACAACCAACCCCTTGGGCGGAGTTACGGGCCCCGCCAACCAGCAGCCGCAGATATGGGCCTTATCTCCCTCCGTCTTCAACGTCGCGCCCAGGCCCATATCGCCTCTCGTCGCAACGAATATTCCAGAAGCTTGGCCCGTGACGGCGGCTTGCAGTAACACTTCTAACTCAAGCACGGCGGGGGCTAAGGTGGCAACGAAATCCAGCATGGCACCTAGTGTTAGTTCCAGCGGGACCAAAGGTAGTGGCAAGGCTCACGTGTTGAGGGATTTTTCGCTGCAAATTTTCGATAAGCAAGAGTTGCAGTTCATGGGCCGCTCTGGGACTCACTCCAATCCATGA 1059 0.6138 MDQYDDGGTTDLSTSDPDTEKDQPETTNLNGVPKQRNTFEHTTGFQVLPLKEEPTDSEPDPDPRLGIVPVAMPVPLPVPVKPARRSSARDRHTKVEGRGRRIRIPATCAARIFQLTRELDHKSDGETVRWLLEHAEQAIIKATGTGTVPAIAVSVGGALKIPTTSSSSADHDNQAEKTPNKKRKRPSNSEFVDINDAVSQSSGLAPVHVPQGLVPVWAVGNPSMVVPSNTFWMIPQAATTTNPLGGVTGPANQQPQIWALSPSVFNVAPRPISPLVATNIPEAWPVTAACSNTSNSSTAGAKVATKSSMAPSVSSSGTKGSGKAHVLRDFSLQIFDKQELQFMGRSGTHSNP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1532 352 MobiDBLite consensus disorder prediction 163 188 - -
Ssu6g1532 352 MobiDBLite consensus disorder prediction 295 323 - -
Ssu6g1532 352 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 350 IPR005333 GO:0003700
Ssu6g1532 352 MobiDBLite consensus disorder prediction 295 321 - -
Ssu6g1532 352 Pfam TCP family transcription factor 87 187 IPR017887 -
Ssu6g1532 352 ProSiteProfiles TCP domain profile. 88 142 IPR017887 -
Ssu6g1532 352 MobiDBLite consensus disorder prediction 174 188 - -
Ssu6g1532 352 MobiDBLite consensus disorder prediction 24 44 - -
Ssu6g1532 352 MobiDBLite consensus disorder prediction 1 66 - -
Ssu6g1532 352 MobiDBLite consensus disorder prediction 78 97 - -
Ssu6g1532 352 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 5 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1532 Ssu-Chr6 25140213 25141271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1532 25 349 TCP Transcription Factor Family AT2G45680 44.353 1.45e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu6g1532 TCP 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1532 - - gmx:100797827 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1532 6 25140213 25141271 Ssu6g1532 6 25140213 25141271 ECH