Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1525 ATGGCTTCTTGTGCTGGCAAACCTTTGTGTAATCATTCTCTAATAAACACTACCAAACATCCCCCAAAGCGCTCCGTTTTGCTGAAGGACTACCTCAGGGACGACCTGAGCTCGTGTTCATCGAACGGTTTTAAATCGTTCCCGCGCCGACAATGCTGCACCACCGTGGGATTCTTCGTGGAGAAAGATCTCCAACTCCAACGCAAAAGAAGGAACACACTCCCTCGACGACGATCcaattattcttcttctttctccacCATATCGGCACTGCAGAGAGCTTCTGGAGCCGTAATCAACGCCATAAAGTCGCTGCCATTGTCACAAAAGAGTGCTAAAGCCAAGAAAGCTGCTACTGGCCTTCTTTCTAGAAGCCTCTCGAGGAAGCTGTTGAGTAGAAGCTTCTGGAGAAAAGCAGCGAGGGAAGAGGGAAGCGAAGGTGTGCCGCGGAGGAGGAGATCTTTCCGCGAACTCATTTTGCAGGATGAGGAGCATCATAAAGCGACGTCGTTGAATGAGGATACCGTGTTTGCAACCCCGAGCATGACCACCTCCTCGGGTTGTGGCAGTGACAGCTGGGGAGACAGCGAATTCACTTTTGCATCTACCGTTGCTTCCTCTGAGAGCTCCAACGAAAATCACTTGGTACCTGAGGGTACCAAAGACGGTGCACCGCAGCACAAGCCAGATGAAGTAGCAACCAAAGAATATTGGCCAAATGAGAAGGAACAATTTAGTCCTGTATCAATACTAGATTGCCCAtttgaagatgaagaagagatTTATAAGTCTCATTTCACATCCACTTCCACTGTTCTTTCCTTCTTGGAAGGAGCCAAACAAAAGCATATGCAGAAAAGACGCTATTTTGAAAGCGTGGCTCCACTGGAGCCGGTGGTTTTAGAGAACAGGTTCGCGCGGTTAGAGTTGGGGGATGAACCACACGACCATTCTCCAAAACAATGTTCCCCCGTTTTAGTGCCAATAAAGCGTACCCAAAACGGTAACAGCAACTTGCGTCGTGACAACAATCACAACATCGAGGAGAATATTGCTTGCGATCTTCTCAACTTCGTTAAAAGGTCAATTCCATCCAACAGTTTGATAATTAAGGCAGAGAACCTGCTGTTTGATTACTTCAAGCAGAGTATGGGGGAAAGTAAAGACATTGATCATTCAAAGAAGCTTCACCTTAGCAAGGTAGCCGAGGATTGGATACATGGACAACCCCAAGAACAATATTTGGGTTGGGAAGTGCAAGGAGGAAGGTGCGTCTACATTAGGGAGATGGATAAGTGTGGGGAGTGGAAGAACTCTGATCAAGAAATACAACAATTGGCCCTGGAGCTGGCAAACGAGGTCTTCGCAAATTTGGTTAATGAGCTCGTACTTGACCTCACGACACGTGCTAGCCACTGA 1419 0.463 MASCAGKPLCNHSLINTTKHPPKRSVLLKDYLRDDLSSCSSNGFKSFPRRQCCTTVGFFVEKDLQLQRKRRNTLPRRRSNYSSSFSTISALQRASGAVINAIKSLPLSQKSAKAKKAATGLLSRSLSRKLLSRSFWRKAAREEGSEGVPRRRRSFRELILQDEEHHKATSLNEDTVFATPSMTTSSGCGSDSWGDSEFTFASTVASSESSNENHLVPEGTKDGAPQHKPDEVATKEYWPNEKEQFSPVSILDCPFEDEEEIYKSHFTSTSTVLSFLEGAKQKHMQKRRYFESVAPLEPVVLENRFARLELGDEPHDHSPKQCSPVLVPIKRTQNGNSNLRRDNNHNIEENIACDLLNFVKRSIPSNSLIIKAENLLFDYFKQSMGESKDIDHSKKLHLSKVAEDWIHGQPQEQYLGWEVQGGRCVYIREMDKCGEWKNSDQEIQQLALELANEVFANLVNELVLDLTTRASH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1525 472 MobiDBLite consensus disorder prediction 171 191 - -
Ssu6g1525 472 PANTHER OS04G0572500 PROTEIN 13 466 - -
Ssu6g1525 472 MobiDBLite consensus disorder prediction 172 191 - -
Ssu6g1525 472 PANTHER OS04G0572500 PROTEIN 13 466 - -
Ssu6g1525 472 MobiDBLite consensus disorder prediction 204 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1525 Ssu-Chr6 25054950 25058452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1525 15 467 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 28.150 2.42e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1525 - - gmx:102663212 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1525 6 25054950 25058452 Ssu6g1525 6 25054950 25058452 ECH