Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1521 ATGAACATTCTCGGACAATCATTTGACAAGTCAAACAACGGCTGCTACTCTTGTTCCTCACCGGAAACAACGAACACCGCTCCCTCCGACGAGGAGCTGCACGCATTAGCGTCGGCGCGGCCGAAGAAACGCGCGGGGCGTCGAATTTTCAAGGAGACGAGGCACCCCGTGTACCGAGGGGTGCGACGGAGGAACAACGACAAGTGGGTCTGCGAGGTTCGCGTCCCCAACGACAAGTCCACCAGGATTTGGCTTGGAACATACCCGACGCCCGAGATGGCGGCACGTGCGCACGACGTTGCGGCGCTCACGCTTCGGGGCAAGTCGGCGTGTCTCAACTTCGCCGACTCGGCCTGGCGGCTGCCTCTGCCGGCGTCGACCAACGCGAAGGAGATACGGCGAGTGGCGGCGGAGGCTGCTGTGGCGGTTGCGGCTGAGGACAGTTGCGGCGAGCAACGGAATGTGAATGCCGTTGCTGACAGTGAAGTTAGCAGCAGTGACGTCAGCGTTGATGAAGATGCCAATAAAGGTTTTCAGGGATTGTATGATCTGGACGAAATTACAATGCCAGATGAGTGGCTTCAGAGTATGGCGAATGAGCCTTTACGATCGCCTACTTTTGTAACATATGTTAGGGACTGGAATTTTGTGGAGGATGATGCTGAGGTGTCCTTGTGGAGCTTCAGCGTCTGA 693 0.57 MNILGQSFDKSNNGCYSCSSPETTNTAPSDEELHALASARPKKRAGRRIFKETRHPVYRGVRRRNNDKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALTLRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAAVAVAAEDSCGEQRNVNAVADSEVSSSDVSVDEDANKGFQGLYDLDEITMPDEWLQSMANEPLRSPTFVTYVRDWNFVEDDAEVSLWSFSV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1521 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 230 - -
Ssu6g1521 230 ProSiteProfiles AP2/ERF domain profile. 57 115 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 SUPERFAMILY DNA-binding domain 57 117 IPR016177 GO:0003677
Ssu6g1521 230 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 Pfam AP2 domain 56 107 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Ssu6g1521 230 SMART rav1_2 57 121 IPR001471 GO:0003700|GO:0006355
Ssu6g1521 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 230 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1521 Ssu-Chr6 25015636 25016328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1521 36 228 AP2-EREBP Transcription Factor Family AT4G25470 51.707 1.62e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu6g1521 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1521 - - gmx:100795696 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1521 6 25015636 25016328 Ssu6g1521 6 25015636 25016328 ECH
Ssu6g1521 6 25015636 25016328 Ssu2g2820 2 89203610 89204476 PCT