Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1520 ATggcatcatcatcatcgtcatcatcCAAGAGGCACCCGGTGTACCATGGAATCCGGTGCCGCGGAGGAAAATGGGTCACTGAAATCCGCGAGCCACGTAAGACCAACCGCATATGGCTGGGGACGTTCCAGACGCCGGAGATGGCGGCCGCCGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAAGCGGTTCTCAATTTTCCTGACTGGGTTGGCAAGTACCCGGTACCCGCGTCCAAATCCCCTGCGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACAACAATGCTAATGCATCAACAACTAATGAAGCAATTCAGTCTCATAACACTGATAATTATAATGTTGTTCCTTCGTTTGAAACTGAGTTTCTAGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTCGACATGGCTGGGGGGATGTTGCTATCCCCTCCCAGAATGAGCCCACCCTCCGATGACTCAACCGAAAGTTTTGTTGGAGAAACTTTGTGGAACTTTTGA 543 0.512 MASSSSSSSKRHPVYHGIRCRGGKWVTEIREPRKTNRIWLGTFQTPEMAAAAYDVAALALKGGEAVLNFPDWVGKYPVPASKSPADIRTAAIAAAELMKPEASHNNANASTTNEAIQSHNTDNYNVVPSFETEFLDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDDSTESFVGETLWNF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1520 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 180 - -
Ssu6g1520 180 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Ssu6g1520 180 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Ssu6g1520 180 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Ssu6g1520 180 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Ssu6g1520 180 CDD AP2 15 71 IPR001471 GO:0003700|GO:0006355
Ssu6g1520 180 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Ssu6g1520 180 PANTHER ETHYLENE RESPONSE FACTOR 3 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1520 Ssu-Chr6 24959060 24959602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1520 9 180 AP2-EREBP Transcription Factor Family AT5G52020 51.977 1.08e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1520 AP2 1.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1520 - - gmx:100793589 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1520 6 24959060 24959602 Ssu6g1520 6 24959060 24959602 ECH
Ssu6g1520 6 24959060 24959602 Ssu2g2821 2 89230494 89231024 PCT