Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1515 ATGTTGGCTGGGTGTTCTAGTTCGACATTGTTGTCACCGAGGCACAGATTAAGGAGCGAAGCGTCTGCACAGTTTCAAGCCTGCCACCTCCAGATGAACACGCAGAGATTGGACTTGCCATGTAGCAGCTTCCCTCGCAAGGACACCTCTTCACGTTCGCAGCCCCTGAGGCCAGTGGGGCTTTCGGTGGAGAAACCAATAGAAGCCAAGACCAGCACCTGTTCTCTGAAGCACAACATTCGACTCCCGCCTCTGGCAACCACAGcatcagcagcagcagcaacaacaacgTTGGGAGAGGCTATCAAGGACAAGAGTTTGAAGAGGCTCGCGGAGCACGACGAGTCCTTCGCCAACGTCGCCAAGAGGAAAAAGGGTAGCACCGAGTGTGATAACTTTTGGTTTCAGCCTGGTGGTGTTGAGAGCGCTACTTTAGGTGGGCTTAACAACACTTCGCTTGCCTTTTCTTCAGAGGAAGAAGAGAGGGTTTGTTTTGTTCCTTCTGAAGTGGTGTCTCATTCCACACCTTTGCCTTTAAACCCTTGGCTGGAATCATGTGTCACGAAGATCACCAATTTCGGCGAGGGTAGCCACCGTCCTCATAACGACCATCCAAGAGAAGGTTCGGTCTCCAACGCTTCTTCAGAGAGCCAAGGGTTGAGCCTGAGGTTAAACGACAACGTTGCAGAGCATGAAGTGGGAAACGGTTCGGGGAATCCTTATCATCACCACCAGGTGGAGACAGGGGAAGAAGATGATCATCACGGGTTCGAGCTCGTTAGCTTGCTCACTGGCTGCGTTGATGCCATTGGATCAAGAAACGTCACTGCTATCAACCATTTCATAGCAAAACTGGGTGATCTAGCCTCTCCAAAGGGAACCTCCATAAGCCGAATCTGTGCTTATTTCACAGAAGCCTTAGCCATTAGAGTCACAAGGCTTTGGCCTCATGTTTTTCACATCACAACCACTTCTCGGGACATGGCGGACGATGATGAAACCGGCACTGCTTGGAGACTTCTCAACCAGGTCACCCCGATTCCTAAGTTCCTTCATTTCACATCAAACGAGATGCTCCTGAGGGCGTTTGAAGGGAAAGACAGGGTTCATATAATAGACTTTGACATCAAGCAAGGGCTTCAATGGCCTAGCTTGTTCCAGAGCCTGGCTTCGAGGGCAAACCCTCCGAGTCACGTGAGAATCACGGGGATAGGGGAGTCAAAGCAGGACCTAAACGAAACCGGAGACAGACTCGCCGGTTTTGCCGAAGCGCTAAACCTTCCCTTCGAGTTTCACCCCGTCGTGGACAGACTCGAGGACGTGAGGCTGTGGATGCTTCACGTGAAGGAGCACGAAACGGTGGCTGTGAACTGCGTTTTGCAGCTGCACAAGACGCTTTATGACGGAAGCGGAGGAGCACTGAGGGACTTTTTGGGCCTAATCCGCAGCACCAATCCTAGTGTGGTCGTAATGGCCGAGCAAGAAGCAGAACACAACGAGACCAGGTTGGAAGCGAGGGTGAGCAATTCGTTGAAGTATTACTCGGCATTGTTTGATTCCATTGACGAGAGTGGGCTTCCGCAAGAGAGTGCGGTGAGGGCGAAGATAGAGGAGATGTATGCCAAGGAGATAAGGAACATCGTCGCGTGTGAAGGGAGGGACAGGTTGGAGAGGCACGAGAGTTTTGGGAACTGGAGGAGGATGATGGTGGAGCAAGGAGGGTTCAGATGCATGGGAGTTACGGAGAGGGAAATGAGTCAGAGCCAGTTACTGTTGAAGATGTACTCGGGTGAGAGTTACAGTGTCAAGAAACAGGAGAAGGAAGGGGCAACAGCAGTCACTCTTAGTTGGCTAGACCAACCTTTGTATACTGTCTCCGCTTGGGCGCCAGTTGATGTTGCGGGTACCTCGTCCTCTTTTTCTCAGCCAAGCTGA 1935 0.5106 MLAGCSSSTLLSPRHRLRSEASAQFQACHLQMNTQRLDLPCSSFPRKDTSSRSQPLRPVGLSVEKPIEAKTSTCSLKHNIRLPPLATTASAAAATTTLGEAIKDKSLKRLAEHDESFANVAKRKKGSTECDNFWFQPGGVESATLGGLNNTSLAFSSEEEERVCFVPSEVVSHSTPLPLNPWLESCVTKITNFGEGSHRPHNDHPREGSVSNASSESQGLSLRLNDNVAEHEVGNGSGNPYHHHQVETGEEDDHHGFELVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGTSISRICAYFTEALAIRVTRLWPHVFHITTTSRDMADDDETGTAWRLLNQVTPIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGESKQDLNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHETVAVNCVLQLHKTLYDGSGGALRDFLGLIRSTNPSVVVMAEQEAEHNETRLEARVSNSLKYYSALFDSIDESGLPQESAVRAKIEEMYAKEIRNIVACEGRDRLERHESFGNWRRMMVEQGGFRCMGVTEREMSQSQLLLKMYSGESYSVKKQEKEGATAVTLSWLDQPLYTVSAWAPVDVAGTSSSFSQPS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1515 644 MobiDBLite consensus disorder prediction 194 217 - -
Ssu6g1515 644 ProSiteProfiles GRAS family profile. 250 629 IPR005202 -
Ssu6g1515 644 PANTHER SCARECROW-LIKE PROTEIN 28 6 633 IPR030027 -
Ssu6g1515 644 Pfam GRAS domain family 259 628 IPR005202 -
Ssu6g1515 644 MobiDBLite consensus disorder prediction 231 250 - -
Ssu6g1515 644 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 633 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1515 Ssu-Chr6 24828952 24830886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1515 1 628 GRAS Transcription Factor Family AT1G63100 56.213 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1515 GRAS 1.4e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1515 - - gmx:100786173 1025.77