Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1511 atggGTAAGGCGTCAAAGTGGTTTCGCGGGCTCCTTGGTCTGAAAAAAACAGAGTATAGTAGCTCACCCGCAAAGCCACCCAAAGAGAAGCGCCGATGGAGCTTCGTTAAATCATACACAGAAAAAGACAACAACAGTGGCGCCACGTGTCCACAACACACagacagcaacaacaacaacaacaaaaagcaTGCCATGGCAGTGGCTGCGGCCACCGTTGCGGTGGCGGAGGCGGCGGCGGCTGCGGCCGAAGCGGCTGCCGTCGTGGTGAGACTAACGAGCAGCAGCGGCAGGTGCGCCGACGCCGGACCCATCAGGATTCGCCAACATTGGGCTGCCGTTAAGATCCAAGCCGCTTTTCGTGGCTGTTTGGCAAGAAGGGCACTGCGTGCATTAAAGGGGTTGGTGAAGCTCCAAGCACTGGTGAGAGGTCACATTGAGAGGAAACGGACGGCAGAGTGGCTGAAAAGAGTGCAAGCACTCTTACATGCACAGGCACAAGTCTCTGCAGGGTTGGCCCTGCATGCCTCACCTTCGAGTGCAAAGTTATCTAGCCACTTCCATGGTCCAGCAACACCCGAAAAATTTGAAAGCCCTATCAGAACTAAAAGCATGAAATATGAGCATTCACCTGTACTCAAGAGAAATGGCTCCAAATCCTGTGTCCAGATCAATGGCTATCAAGAGATATGTGGGAATAGATCAGAGAGTCAAGTACATGAACAATCGTGGAGCTCAGGAAGATCATTGACAAGAACTTATAGCTCCAATGATGAAAGCAGGGTTCTTGAAATTGATTCTGGAAAACCACACTTCACACTAAAGCGTAGAAACCTCTCTTACTCCATGGGTTCTGACCATTATAGTAAGAGTTTGAACAGCACAAAGGAGTCAACATCTCTTCAATCTGGTCAAAGCCCATGTCGTGAAGTACAGTCTCACACCTCACAAAAAATCAATGAGGTTGAGGAGAGCCCATTCTGCACCGCGGACAATAGTCCCCAGTTCTTATCTGCCACTTCTAAAGATGAAGGCTTCAAACGAAGCCCTTTTACTCCTACTAGGAGTGATGGCTCTAGAAGCTACATTCGTGGTTACCCTGACTACCCAAGTTACATGGCATGCACCGAGTCTTCAAAGGCAAAGGTCAGATCTCTGAGTGCCCCAAAACAAAGGCCCCAATGTGAGAGGTCCGGTTCATCTAATAGGTACTCACTTAATGGATTTGACGTGTCAAGATTGGCCACACAAAGGGCAACGCACGCAAGCTTCGCCAACAAACCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGGTACAGATACTGA 1341 0.4855 MGKASKWFRGLLGLKKTEYSSSPAKPPKEKRRWSFVKSYTEKDNNSGATCPQHTDSNNNNNKKHAMAVAAATVAVAEAAAAAAEAAAVVVRLTSSSGRCADAGPIRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRVQALLHAQAQVSAGLALHASPSSAKLSSHFHGPATPEKFESPIRTKSMKYEHSPVLKRNGSKSCVQINGYQEICGNRSESQVHEQSWSSGRSLTRTYSSNDESRVLEIDSGKPHFTLKRRNLSYSMGSDHYSKSLNSTKESTSLQSGQSPCREVQSHTSQKINEVEESPFCTADNSPQFLSATSKDEGFKRSPFTPTRSDGSRSYIRGYPDYPSYMACTESSKAKVRSLSAPKQRPQCERSGSSNRYSLNGFDVSRLATQRATHASFANKPYPGSGRLDKLGMPVGYRY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1511 446 PANTHER IQ-DOMAIN 5-RELATED 1 441 - -
Ssu6g1511 446 MobiDBLite consensus disorder prediction 285 316 - -
Ssu6g1511 446 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Ssu6g1511 446 Gene3D - 107 161 - -
Ssu6g1511 446 Pfam IQ calmodulin-binding motif 136 150 IPR000048 GO:0005515
Ssu6g1511 446 Pfam IQ calmodulin-binding motif 110 130 IPR000048 GO:0005515
Ssu6g1511 446 Pfam Protein of unknown function (DUF4005) 333 407 IPR025064 -
Ssu6g1511 446 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 441 - -
Ssu6g1511 446 MobiDBLite consensus disorder prediction 338 359 - -
Ssu6g1511 446 SMART iq_5 108 130 IPR000048 GO:0005515
Ssu6g1511 446 SMART iq_5 131 152 IPR000048 GO:0005515
Ssu6g1511 446 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1511 Ssu-Chr6 24784677 24789000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1511 1 446 IQD Protein Family AT4G23060 41.379 6.93e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1511 - - gmx:100793587 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1511 6 24784677 24789000 Ssu2g2832 2 89371727 89375200 PCT