Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1510 ATGTCGTCGTCTTCATCAAGCAACGCCTACGACGTGCCATGGGTAGAGAAGTACCGTCCCTCCAAGGTCGCCGACATAGTCGGCAACGAGGACGCCGTCTCCAGACTCCAAGTCATCGCTCGCAACGGCAACATGCCCAACCTCATTCTATCCATTATTGAGCCCATCCAGAGTAGATGTGCCATTGTGCGATTTTCGCGATTATCTGATCAAGAGATACTCGGTCGCCTCATGGTTGTGGTTCAAGCCGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGACGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATACAGCGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCGGGCCTCAAGCAACTGTATGACTTAGGATATTCCCCCACAGATATAATCACAACACTTTttcgtataataaaaaattacgatATGGCTGAGTACCTGAAACTAGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTGGCTAAGCTTTCTCTAGTTCGTGAGACAGCTAAAGCTGTATAA 690 0.4449 MSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARNGNMPNLILSIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1510 229 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 52 227 - -
Ssu6g1510 229 Gene3D - 5 52 IPR027417 -
Ssu6g1510 229 Gene3D - 133 225 - -
Ssu6g1510 229 SUPERFAMILY post-AAA+ oligomerization domain-like 132 223 IPR008921 GO:0003677|GO:0006260
Ssu6g1510 229 Gene3D - 69 132 - -
Ssu6g1510 229 Pfam Replication factor C C-terminal domain 133 218 IPR013748 -
Ssu6g1510 229 PANTHER REPLICATION FACTOR C SUBUNIT 2 52 227 - -
Ssu6g1510 229 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 51 - -
Ssu6g1510 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 116 IPR027417 -
Ssu6g1510 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 50 IPR027417 -
Ssu6g1510 229 CDD HLD_clamp_RFC 68 130 - -
Ssu6g1510 229 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 51 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1510 8 51 Core DNA Replication Machinery Family AT1G63160 86.364 5.81e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1510 K10755 - gmx:100781364 357.451