Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1509 ATGGCGACGACGAGGTCACCGAACCGTTCTTCCGAGGACGCCGCCGATCCGACGCCGTTCATCGGGACATCCTCCGACGACTCCACCTCCGGCCGCCGTCTCCTCCGCCGCCCGAGCCTCCGCGAGGCGGCGCGGTTCCTGCGACAGGCGAGCGGGCGGCGGCTGATGCGCGAACCGTCGATGGTGGTGAGGGAGGCGGCGGCGGAGCAACTGGAGGAGCGGCAGAGCGATTGGGCCTACTCGAAGCCCGTCGTGGTCCTGGACATTCTCTGGAACTTCACGTTCGTCGTTGCCGCCGCCACGGTCTTCGTTCTGAGTCGCGACGAGAATCCGAACATGCCTCTCAGGTTGTGGATTTCGGGCTACGCTCTGCAGTGCGTCCTTCACGTCGTGTGCGTCTGCGTCGAGTACCGGCGGCGCTGGCGCCGCCGGGAACAGGCGACCGCCGCCGCCGCATTCGCGGGTGGCGGCAGCGGGGATTTGAGTTCGGGCTCGATGGATGGCTCTGGACAGTACGTGTCGTTGGCGCCGTTCGAGGACGATGGTGTAAGTGTGGCAAAGCATTTGGAATCAGCCAAcactatgttttcttttctttggtgGGTTGTTGGATTCTATTGGGTATCAGCCGATAGTCAAGCTTTGGTCCGAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCATGCATAATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAACAGTTGTCAAAATTCCAGTTCCAAAGAACTGAAACTGATGAGAAACTAGCTGGAAATATACAAGGAGCTGCTGGAGGAATAATGACTGAATGCAGTGCTGATTCTCCCATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGTACATAAATGCTACTTGCCCCCTCTGCAAGTACAACATCTTGAAAAGTACCAGTCATGGTCAAGATGAAGTTTAG 1143 0.5354 MATTRSPNRSSEDAADPTPFIGTSSDDSTSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFTFVVAAATVFVLSRDENPNMPLRLWISGYALQCVLHVVCVCVEYRRRWRRREQATAAAAFAGGGSGDLSSGSMDGSGQYVSLAPFEDDGVSVAKHLESANTMFSFLWWVVGFYWVSADSQALVRDSPQLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFQFQRTETDEKLAGNIQGAAGGIMTECSADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSTSHGQDEV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1509 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 379 IPR013083 -
Ssu6g1509 380 SUPERFAMILY RING/U-box 316 373 - -
Ssu6g1509 380 MobiDBLite consensus disorder prediction 1 36 - -
Ssu6g1509 380 SMART ring_2 325 365 IPR001841 -
Ssu6g1509 380 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 380 - -
Ssu6g1509 380 CDD RING-H2_RNF111_like 324 368 - -
Ssu6g1509 380 Pfam Ring finger domain 324 366 IPR001841 -
Ssu6g1509 380 PANTHER TARGET OF ERK KINASE MPK-1 3 380 - -
Ssu6g1509 380 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Ssu6g1509 380 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1509 Ssu-Chr6 24759212 24763519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1509 18 375 C3H Transcription Factor Family AT1G68070 49.036 1.30e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1509 - - gmx:100779757 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1509 6 24759212 24763519 Ssu6g1509 6 24759212 24763519 ECH
Ssu6g1509 6 24759212 24763519 Ssu2g2833 2 89380612 89386296 PCT