Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1502 ATGGCCTCCTTGCATCACCCCACAGCTTCCCTCCAATCCAAACACGTCCTAATTCCCCGAAACGCCCTCGCCCAGAAACCCATCCTCAACCTCTCCCTCCCGGGCACCACCTTCACTCCCCTCAAGCTCAAATTCGGCGGCGGCGCCATCCGCCTGTCCCACGGCGCCTCCGGGGCCAGAATGTCGGCCACCGCGGCCACCAGCTACGCCACCGCCCTCGCCGACGTGGCGAACTCCAACAAGACCCTCGACGCGACCACCGCCGACATCGAGAAAATCGACGAACTCTTCTCGGACCCGAAGGTGTCGGACTTTTTCGCGGACCCAACGTTGGACGTGGAGACGAAGCGGAAGTTGCTGGACGAGATCGCGGAATCGTCGGGGTTCCAACCCCACACGAGAAACTTCCTCTACATTTTGGTGGACGCGCAGAGGATCGACCTCGTCAACGAGATAGCGAAGGAGTTCGAGTTGGTGTACAACTCGTTGACCGACACGGAGCTTGCGGTGGTGGCCTCTGTGGTGAAGTTGGAGTCGCAGCACTTGGCGCAGATCGCGAAGCAGGTTCAGAAGCTCACCGGGGCCAAAAACGTGAGGATTAAGACCCTCATTGACCCCAGTTTGGTCGCCGGTTTCACTGTCAGGTATGGCAATTCGGGGTCTAAGCTGATTGACATGAGCGTCAGGAAGCAGCTTGAGGATATTGCTGCTCAGCTTGAGTTGGGTGATATCTCACTCGCCGTATGA 747 0.5877 MASLHHPTASLQSKHVLIPRNALAQKPILNLSLPGTTFTPLKLKFGGGAIRLSHGASGARMSATAATSYATALADVANSNKTLDATTADIEKIDELFSDPKVSDFFADPTLDVETKRKLLDEIAESSGFQPHTRNFLYILVDAQRIDLVNEIAKEFELVYNSLTDTELAVVASVVKLESQHLAQIAKQVQKLTGAKNVRIKTLIDPSLVAGFTVRYGNSGSKLIDMSVRKQLEDIAAQLELGDISLAV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1502 248 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 198 217 IPR020781 GO:0015986|GO:0016020|GO:0046933
Ssu6g1502 248 PANTHER BNACNNG66500D PROTEIN 55 247 - -
Ssu6g1502 248 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 66 239 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PRINTS ATP synthase delta subunit signature 196 211 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PRINTS ATP synthase delta subunit signature 134 145 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PRINTS ATP synthase delta subunit signature 65 84 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PRINTS ATP synthase delta subunit signature 214 232 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PRINTS ATP synthase delta subunit signature 145 159 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 PANTHER ATP SYNTHASE DELTA CHAIN 55 247 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 Pfam ATP synthase delta (OSCP) subunit 66 239 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 Hamap ATP synthase subunit delta [atpD]. 61 241 IPR000711 GO:0015986|GO:0046933
Ssu6g1502 248 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 62 164 IPR026015 -
Ssu6g1502 248 Gene3D - 65 157 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1502 Ssu-Chr6 24664166 24664912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1502 1 247 Primary Pumps ATPases AT4G09650 61.943 2.95e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1502 K02113 - gmx:100815063 394.815