Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1501 ATGCCTGGTATTACTGCATATGCTGGTGTCTTTGAAGTTGATTCTCTAAAGAAAGGAGAATGTGTCTTCATCTCAGCTGCGTTTGATGCTGTTAAGTTGGAAGTGTACCTCAAGTACTTGACTAAGAAGTACTTAAAGAAGCACAATGTACGGGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGGAGTGTTTATGAACTGAGGTACTTCAACTTTGCTGAGAAtgaaggagaggaagaggatTAA 249 0.3655 MPGITAYAGVFEVDSLKKGECVFISAAFDAVKLEVYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNFAENEGEEED 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1501 82 Gene3D - 7 82 IPR038526 -
Ssu6g1501 82 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 29 82 - -
Ssu6g1501 82 PANTHER 60S RIBOSOMAL PROTEIN L22 29 82 IPR002671 GO:0003735|GO:0005840|GO:0006412
Ssu6g1501 82 Pfam Ribosomal L22e protein family 34 80 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1501 Ssu-Chr6 24661882 24662497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1501 48 82 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 88.571 8.88e-19 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1501 K02891 - rcu:8287099 93.9745