Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1500 ATGTCTCTGGGTTCAGCTGATACACCCTCGGAATATTTTCAAAGCTCTATATCCATAGGGTCCTTCCATGCAGTTGCCAAAGGCATAATAGTAGTGGGTTCTGCAGGAAATGAAGGACCTTCTCCTGCAACTCTATCCAACGTTGAACCATGGATGCTCACAGTTGCTGCAAGCACAATTGATAGAGACTTCGCTAGTTATGTTACACTTGGTGACAAGAAAATCCTCAAGGGAGCTAGCCTTTCAGAGCATAGCTTACCATCCAATAAGATGTACCCATTGATCAGTGCTGTTGACGCCAAAGTTAGTGACGAATATGCTACGGAAGCCCCTTTTTGCGTGCATCAAACTCTTGATCCTAAGAAGGTGAAGGGGAAAATATTGGTCTGTCTTCGTGGTGTTAATGATAGACTTGACAAGGGTGTGGAAGCCGCTAGGTTAGGGGCTGCGGGAATGATTTTGGCTAATGACGAGGACTCAGGGTATGAAATTATATCCGACTTCCATGTGCTTCCTGCTTCACATGTTGACTTTGCCAGTGGCAGTTACATTTATAGTTACATCAACCGCACCAAgTCTCCTGTGGCTTACATTTCTAGAGTGAAAACAGAATTGGGTGTAAAGCCAGCTCCATTTGTGGcttcattttcatcaagagGCCCCAATCCCCTTGAGCCAGCAATCCTCAAGCCTGATGTCACTGCACCAGGAGTCAACATCCTTGCGGCTTATAGTGAAGCCCTATCTCCCACAGGTCTAGATTCTGACAAACGAAGAACTCCTTTCATTACATTCTCTGGCACTTCAATGTCATGTCCTCATGTTGCTGGCCTTGCTGGGCTGCTCAAAGCCCTTCATCCTGATTGGAGCCCAGCTGCTATTAAGTCAGCAATCATTACCTCAGCAAATACAGAAGATAACACTGGAAGGCCTATCCTGAATTCATCATTATTGTACGAGGCAACTCCATTTGACTATGGTGCAGGGCACATTCAACCCAATCGTGCTGCAGACCCTGGACTTGTATATGACCtgaatattattgattatttgaaCTTTTTATGTGGTCGTGGCTACAGTATCTCCCAGCTTAAGTTGTTCTACGGCAAGCCTTACACTTGTCCAAAGTCGTTCAGTTTGGCAAATTTCAATTATCCAGCAATCATAATTCCTCGGTTTGACCATCGACATTCTCTGAATGTTACTCGAACTGTTACCAATGTTGGGTCCCCAAGCACGTATAAAGTGCACATCAAGGCACCACCACAAGTTCTAGTTTCGGTTAAGCCTAAGAAGTTGAGAttcaagaaaaagggtgaaAAAAGGGAGTTCAGAGTTACATTGACCTTGAAGCCGCAAACTAAGAACACCACTGATTTCGTCTTCGGGTGGTTGACGTGGACTGATCACAAGCACCGTGTCAGGAGTCCTATTGCAGTTAACATTCAACATTAA 1455 0.4351 MSLGSADTPSEYFQSSISIGSFHAVAKGIIVVGSAGNEGPSPATLSNVEPWMLTVAASTIDRDFASYVTLGDKKILKGASLSEHSLPSNKMYPLISAVDAKVSDEYATEAPFCVHQTLDPKKVKGKILVCLRGVNDRLDKGVEAARLGAAGMILANDEDSGYEIISDFHVLPASHVDFASGSYIYSYINRTKSPVAYISRVKTELGVKPAPFVASFSSRGPNPLEPAILKPDVTAPGVNILAAYSEALSPTGLDSDKRRTPFITFSGTSMSCPHVAGLAGLLKALHPDWSPAAIKSAIITSANTEDNTGRPILNSSLLYEATPFDYGAGHIQPNRAADPGLVYDLNIIDYLNFLCGRGYSISQLKLFYGKPYTCPKSFSLANFNYPAIIIPRFDHRHSLNVTRTVTNVGSPSTYKVHIKAPPQVLVSVKPKKLRFKKKGEKREFRVTLTLKPQTKNTTDFVFGWLTWTDHKHRVRSPIAVNIQH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1500 484 Pfam Subtilase family 1 306 IPR000209 GO:0006508|GO:0008236
Ssu6g1500 484 Pfam PA domain 100 182 IPR003137 -
Ssu6g1500 484 ProSitePatterns Serine proteases, subtilase family, serine active site. 267 277 IPR023828 -
Ssu6g1500 484 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 2 482 - -
Ssu6g1500 484 CDD PA_subtilisin_like 67 198 - -
Ssu6g1500 484 SUPERFAMILY Subtilisin-like 1 341 IPR036852 GO:0004252|GO:0006508
Ssu6g1500 484 ProSiteProfiles Serine proteases, subtilase domain profile. 1 337 - -
Ssu6g1500 484 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 482 IPR045051 -
Ssu6g1500 484 Pfam Fibronectin type-III domain 382 480 IPR041469 -
Ssu6g1500 484 Gene3D - 61 205 - -
Ssu6g1500 484 SUPERFAMILY PA domain 118 189 IPR046450 -
Ssu6g1500 484 Gene3D - 354 483 - -
Ssu6g1500 484 Gene3D Peptidase S8/S53 domain 1 350 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1500 Ssu-Chr6 24658011 24660297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1500 11 482 Subtilisin-like Serine Gene Family AT5G59810 55.391 8.49e-176 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1500 - - ccaj:109807044 712.22