Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1499 ATGCTCACAGTTGCTGCAAGCACAATTGATAGAGACTTCGCTAGTTATGTTACACTTGGTGACAAGAAAATCCTCAAGGGAGCTAGCCTTTCAGAGTATGACTTACCATCTAATAAGATGTACCCATTGATCAGTGCTGTTGACGCCAAAGTTAATGATGAATATGCTATGTTAGCCCCTTTTTGCGTGCATCAAAGTCTTGATCCTAAGAAGGTGAAGGGGAAAATATTGGTCTGTCTTAGCGGTGGTAATAGTAATATTAAGGAGGGTGTGGAAGCTGCTAGTTTAGGCGCTGTTGGAGTGATTTTGGCTAATGACAAGGACACAGGGAATGAAATTTCTCCCGACCCCCATGTGCTTCCTGCTTCAAATGTTGACCCTGCGAGTGGCAGTTACATTTATAGTTACATCAACCGCACCAAGTCTCCTGTGGCTTACATTTCTAGAGTGAAAACAGAATTGGATGTAAAGCCAGCTCCATTTGTGGCCTCATTTTCATCAAGGGGCCCCAATCCCCTTGAGCCAGCAATCCTCAAGCCTGACGTCACCGCACCAGGAGTCAACATCATTGCTGCTTATAGTGAAGCCCTATCTCCCACAGGTCTAGATTCTGACAAACGAAGAACTCCTTACATTACATTGTCCGGCACTTCAATGTCATGTCCTCATGTTTCTGGCCTTGCTGGGCTGCTCAAAGCCCTTCATCCTGATTGGAGCCCAGCTGCTATTAAGTCAGCAATCATTACCTCAGCAAATACAGTAGATAACACTGGTAGGCCTATCCTGAATTCATCATTATTGTACGAGGCAACTCCATTTGACTATGGTGGAGGGCACATTCGACCCAATCGTGCTGCAGACCCTGGACTTGTATATGACCtgaatattattgattatttgaaCTTTTTATGTGGTCGTGGCTACAGTAGTTCCCAGCTTAAGTTGTTCTACGGCAAGCCTTACACTTGTCCAAAGTCGTTCAATCTAGCAGATTTCAATTATCCAGCAATCACAATTCCGCGATTTGACCCTACACATTCTCTGAATGTTACTCGAACTGTTACCAATGTTGGGTCCCCAAGCACGTATAGAGTGCGCATCAAGGCACCACCACAAGTTCTAGTTACGGTTGAGCCTAAGAAGTTGAGAttcaagaaaaagggtgaaAAAAGGGAGTTCAGAGTTACATTGACCTTGAAGCCGCAAACTAACAACACCACTGATTTCGTCTTCGGGTGGTTGACATGGACTGATCACAAGCACCGTGTCAGGAGTCCTATTGCAGTTAACATTCAACATTAA 1302 0.437 MLTVAASTIDRDFASYVTLGDKKILKGASLSEYDLPSNKMYPLISAVDAKVNDEYAMLAPFCVHQSLDPKKVKGKILVCLSGGNSNIKEGVEAASLGAVGVILANDKDTGNEISPDPHVLPASNVDPASGSYIYSYINRTKSPVAYISRVKTELDVKPAPFVASFSSRGPNPLEPAILKPDVTAPGVNIIAAYSEALSPTGLDSDKRRTPYITLSGTSMSCPHVSGLAGLLKALHPDWSPAAIKSAIITSANTVDNTGRPILNSSLLYEATPFDYGGGHIRPNRAADPGLVYDLNIIDYLNFLCGRGYSSSQLKLFYGKPYTCPKSFNLADFNYPAITIPRFDPTHSLNVTRTVTNVGSPSTYRVRIKAPPQVLVTVEPKKLRFKKKGEKREFRVTLTLKPQTNNTTDFVFGWLTWTDHKHRVRSPIAVNIQH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1499 433 CDD PA_subtilisin_like 16 147 - -
Ssu6g1499 433 Pfam PA domain 55 131 IPR003137 -
Ssu6g1499 433 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 1 431 - -
Ssu6g1499 433 SUPERFAMILY PA domain 69 133 IPR046450 -
Ssu6g1499 433 Pfam Fibronectin type-III domain 331 429 IPR041469 -
Ssu6g1499 433 ProSitePatterns Serine proteases, subtilase family, serine active site. 216 226 IPR023828 -
Ssu6g1499 433 Pfam Subtilase family 132 258 IPR000209 GO:0006508|GO:0008236
Ssu6g1499 433 ProSiteProfiles Serine proteases, subtilase domain profile. 1 286 - -
Ssu6g1499 433 Gene3D Peptidase S8/S53 domain 1 299 IPR036852 GO:0004252|GO:0006508
Ssu6g1499 433 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 431 IPR045051 -
Ssu6g1499 433 Gene3D - 303 432 - -
Ssu6g1499 433 Gene3D - 10 154 - -
Ssu6g1499 433 SUPERFAMILY Subtilisin-like 2 290 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1499 Ssu-Chr6 24638700 24641202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1499 1 431 Subtilisin-like Serine Gene Family AT5G59810 54.630 9.77e-154 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1499 - - ccaj:109807325 659.833