Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1497 AtggccaccaccaccaccaccagtcTTGGCGGCGGCGGCGCCGGCGGAGATGACCGCGTCCTCGCGACCGCTCAGCAGATCGTGAAGAGTCTGAGAGCCGCGAAAGAGGATCGCGAAGACATGCTCCTGATCTTCTCCACCTTCGACAACCGCCTCTCCGGCATCTCCGACCTCATCAACGGCGACGATTCCAAGTCCTCCTCCGACGAAGACCTCGACCGCTTCGAGTCTGCCGAGAAAGTCATCCTCGCCGATGCCTCCCTCTCCGGCGAGCCTTCGCGCCAGTCCACCTCGCTCTTCAACCCTCCGAACAACCCCGCGGAGTACTTCTCCGCCGTCGACGAGATCATCCACTGGATGGAGCAGTTGTCGATCGCGCCGCCGTCCGCCGCCGCCGGTCGCACTGGTCAGATCATCGTCGACCGCGCCGAGAACGCGATTCAGCTCGCGATGTCGCGGCTTGAGGACGAGCTGCGCCACGTGCTGATTTGCAACACCATCCCTCTCGACGCCGTGAGCCGCTGTGGCTCGACCAGGAGGGTTTCGCTTTCCTTCGGCTCGCACGACGGCGCAATCGACGATACCCTAGGGAGCTTCGGCGAAGTCGGCGATCGCGGCTCGAGCCGCTTCCACGAGCGCGGCGCGAGCCTCGGCGACGATTTGTTCGTCGATTTGGTGCGTCCCGAAGCGGTTCAGGACCTCAGAGAAATCATCGACCGCATGTTGAGGTCTGGTTACGAGAGAGAGTGTCTTCAGGTTTATAGCAGCGTCCGTCGTGACGCTTTGGATGAATGTTTGGTTATTCTCGGTGTCGAGAGGTTGAGTATTGAAGAGGTTCAGAAGGTTGAGTGGAAGAGTTTGGATGAGAAGATGAAGAATTGGGTTCAGGCTGTTAAGGTTGTTGTAGGGGTTTTGTTGAGTGGGGAGAAGAGGCTGTGTGATAGTTTGTTTGGGGATTTGGAGGATTTGAAGGAGATTTGTTTCAATGAGACTGCTAAGGGGTGTGTGATGCGGTTGCTGAATTTTGGCGAGGCTATTGCGATTTGTAAGCGGTCGCCGGAGAAGTTGTTTAGGATATTGGATATGTACGAGGCTTTGAGGGATGCTTTACCTGATTTGCAGGTCATGGTGAGTGATGAGTTTGTGATTGGTGAGGCCAATGGAGTGCTGAGTGGGCTTGGTGAGGCTGCCAAAGGGACGTTTGCTGAGTTTGAGAATTGTATTAGGAATGAGACTTCCAAGAAGCCGGTCATAACTGGGGATGTTCATCCCTTGCCTCGATATGTCATGAATTACCTCAAGTTGCTTGTTGATTATGGTGACCCTATGGATTCGCTTCTGGAGATTAGTGAGGAGGATCTCTATCGATTTAAGAATGATCTCGGTGGTGACGGTTCCCGGTTGGAGGCCATGTCCCCCTTGGGACAGCGGATTCTGTTGCTCATGTCTGAGCTTGAGTATAATCTTGTGGAGAAGTCGAGGCTTTATGAAGACAGTGCAATGCAGCAGGTGTTTTTGATGAACAACCTGTATTACCTCGTGCGTAAAGTGAAGGACTCGGATCTTGGGAAGGTCTTGGGAGACGATTGGATTCGGAAGCGGCGTGGTCAGATACGCCAGTACGCCACGGGCTATCTCAGAGCCTCTTGGAGCAAGGCCTTGTCCTGTTTGAAGGATGAAGGGATTGGAGGGAGCTCTAGTAATGCGTCGAAGATGGCTTTGAAGGAGAGGTTCAAGAGTTTCAATGCTTGTTTTGAAGAAATTTACAGGGTCCAGACAGCTTGGAAGGTACCGGATGATCAGCTTCGGGAGGAGATGCGGATATCTATATCAGAGAAGGTGATTCCTGCATACCGCTCCTTTGTGGGGAGGTTTAGGAGCCAGTTAGAAGGAAGGCATGCGGGGAAATACATTAAGTATACACCAGAGGATCTAGAGACCTATCTATTAGATTTATTTGAAGGATCCCCAGCTGTTTTGCATCACATAAGGAGGAAAAGTACATAG 2007 0.5232 MATTTTTSLGGGGAGGDDRVLATAQQIVKSLRAAKEDREDMLLIFSTFDNRLSGISDLINGDDSKSSSDEDLDRFESAEKVILADASLSGEPSRQSTSLFNPPNNPAEYFSAVDEIIHWMEQLSIAPPSAAAGRTGQIIVDRAENAIQLAMSRLEDELRHVLICNTIPLDAVSRCGSTRRVSLSFGSHDGAIDDTLGSFGEVGDRGSSRFHERGASLGDDLFVDLVRPEAVQDLREIIDRMLRSGYERECLQVYSSVRRDALDECLVILGVERLSIEEVQKVEWKSLDEKMKNWVQAVKVVVGVLLSGEKRLCDSLFGDLEDLKEICFNETAKGCVMRLLNFGEAIAICKRSPEKLFRILDMYEALRDALPDLQVMVSDEFVIGEANGVLSGLGEAAKGTFAEFENCIRNETSKKPVITGDVHPLPRYVMNYLKLLVDYGDPMDSLLEISEEDLYRFKNDLGGDGSRLEAMSPLGQRILLLMSELEYNLVEKSRLYEDSAMQQVFLMNNLYYLVRKVKDSDLGKVLGDDWIRKRRGQIRQYATGYLRASWSKALSCLKDEGIGGSSSNASKMALKERFKSFNACFEEIYRVQTAWKVPDDQLREEMRISISEKVIPAYRSFVGRFRSQLEGRHAGKYIKYTPEDLETYLLDLFEGSPAVLHHIRRKST 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1497 668 Pfam Exo70 exocyst complex subunit 292 650 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu6g1497 668 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 57 667 - -
Ssu6g1497 668 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 667 IPR004140 GO:0000145|GO:0006887
Ssu6g1497 668 SUPERFAMILY Cullin repeat-like 99 654 IPR016159 -
Ssu6g1497 668 Coils Coil 140 160 - -
Ssu6g1497 668 Gene3D Exocyst complex component Exo70 93 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1497 Ssu-Chr6 24587582 24589588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1497 18 667 EXO70 exocyst subunit family AT5G50380 60.472 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1497 K07195 - gmx:100818693 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1497 6 24587582 24589588 Ssu6g1497 6 24587582 24589588 ECH
Ssu1g2433 1 67775933 67779961 Ssu6g1497 6 24587582 24589588 PCT