Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1489 ATGCATATGGTAAAAGAGGTTCTCTCCGGTGCGCACCTCTCCGGTTGGCATCCTTCCACGACGTCGTCTTCTTCTCCAACACCCTCACATCACCCGTTCGTCATCGGTGTCTCTGGAGGCACGGCATCGGGGAAAACAACAGTGTGTGACTTGATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCAGTCAGGATTCATTCTACCGCGGTTTGACAAATGATGAGTTGAAGCGCGTTTATGAGTATAATTTTGATCATCCCAATGCGTTTGATACAGAGCAACTCGTAGAAACTCTCAGTAAGCTCAAATCTGGACAGTCGGTTCAGGTTCCAATATATGATTTTAAGCTTCATCAGAGATCTTCTGACAGATCCCGACAGGTCAATGCATCAGAAGTAATAATTATGGAGGGCATATTGGTTTTTCATGAACAACGCGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGACCCAGATATAAGGCTTGCCCGCAGAATAAGACGTGATACTGTTGAGAGGGGTAGAGACGTACACTCTGTACTGGAACAGtatgcaaaatttgttaAGCCTGCCTTCGATGATTTTATTCTTCCGTCCAAAAAATATGCTGACATCATCATACCTCGCGGGGGAGAGAATCGTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACGCTTATTCGTGACAGGGACATATCAAagcatgattttgttttttattcagaTCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGCAAGAAATTGTGCGGTGTATCCATTATTCGAAGTGGCGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATCGGAAAAATTCTCATTCACCGTGAAGGTGGTGAAACCCAGTTATTACAATGTTTTCCACTCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCAGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACACTGCCAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCGGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGAATACACTGTGTATGTAAACGTTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTAAATGACCAGTTCCGTGTCATACCAGGGTTAGGAGAATTTGGTGACCGCTACTTTGGGACGGACGATTCTTAG 1386 0.4214 MHMVKEVLSGAHLSGWHPSTTSSSSPTPSHHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVYEYNFDHPNAFDTEQLVETLSKLKSGQSVQVPIYDFKLHQRSSDRSRQVNASEVIIMEGILVFHEQRVRNMMNMKIFVDADPDIRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGETQLLQCFPLQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESRIIFLNLISAPEGIHCVCKRFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1489 461 Gene3D - 29 235 IPR027417 -
Ssu6g1489 461 MobiDBLite consensus disorder prediction 14 31 - -
Ssu6g1489 461 MobiDBLite consensus disorder prediction 14 37 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 178 189 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 200 213 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 32 49 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 62 73 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 107 122 - -
Ssu6g1489 461 PRINTS Uridine kinase signature 164 174 - -
Ssu6g1489 461 PANTHER URIDINE KINASE 14 457 - -
Ssu6g1489 461 Pfam Uracil phosphoribosyltransferase 250 458 - -
Ssu6g1489 461 ProSiteProfiles UvrC family, homology region profile. 120 221 IPR001162 GO:0009381
Ssu6g1489 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 225 IPR027417 -
Ssu6g1489 461 Gene3D - 236 458 IPR029057 -
Ssu6g1489 461 PANTHER URIDINE KINASE 14 457 - -
Ssu6g1489 461 CDD PRTases_typeI 309 431 IPR000836 -
Ssu6g1489 461 CDD UMPK 34 232 IPR000764 -
Ssu6g1489 461 TIGRFAM udk: uridine kinase 33 232 IPR000764 -
Ssu6g1489 461 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Ssu6g1489 461 SUPERFAMILY PRTase-like 247 457 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1489 Ssu-Chr6 24447221 24452702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1489 26 460 PRT Gene Family AT5G40870 81.839 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1489 K00876 - gmx:100816209 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1489 6 24447221 24452702 Ssu6g1489 6 24447221 24452702 ECH