Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1485 ATGTGTTCAGCAAGCATTCAACATGCAGCCGAGACAGAGAAAGACATCGACGGTGGTGGGAGAAAGAGAAGCAATGGTGGCATGCAGCGACAAAAGCATGAAAATCGGGGCGACGATGTGGGACTTGGAAACGGGAGAAAAACTGCTTCACATACCAACCTGTGCCTCGCCACCTTTTGGCTTCTTGTGCTTGAGAAATCGCTTCCTTGTGGCATCTCAATTAAACAAACACGGcCTCAACAGCCACTTTTGAATTACACAGTGGAGGTTGTAGGACCACTTTCTTGTACAAATGATGGCATATACCTTGTGGGAGGAGCTTTGTCTGGAAATGCTTATCTCTGGGATGTGACCAATGGAAAATTGTTGAAGACTTGGAGGGCtcattataaatctttaaactGCATGCTATTTTCAGATGAcaattctcttcttttttctagttCAGATGATGGTATGATCTGTGTTTGGTCCATGATTAGTCTGTTAGATGTAGAAGAAATGAGAAGCTCGCCACCTTCATTACATTGTTTGTTAGGGCACATGTCATCCATAACAGGTCTTTTAACTACACCCAACagtttcttctcaattttagtgtcaaGCTCCCTTGATGGCACATGCAAGGTTTGGGATTTTATCTCAGGAAGGCTTATGCAAactcaattttatccttttGCAATAACTTCCATCGCCATTCACCAAAAAGAAAGGCTTTTGTTTTGCGGAACAGAAAAAGGAACAATAATCGTCAACAAGCTAGATATTGGTCAGGAAGAAGGTCCTTTCATTGTCACTGTAGGCCAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCTTTGACCTCCTCTCAGGCAGGCCTAATATCTGCATCTGAAGATTGCACGATCTGCCTCTGGGATATCTTCAGTTGGGAAATCATTCGAAGGTTTAGTCTTCAAAAAGGGAAAGTAACTAATCTTGTGGTAGTTTCACGGTCCTCTTTGCTCCCTACATCAAACCACAGGAGAGTCTCAAATCAATATTATGTTTCTCCACTTGACAAGTATCCTCAGCTGATCAACTCATTCAAAGGAACTACCACTCTCCTTTCCTTATGTCGACACCCCAGAGGAAACCAAACCTGCATTAATTTGAGAAGTACTGGTTTATTGAGACAGAGGAATTCTAGTTCACAGAAAGCAGATGTGCCTATGGCCATGGCCGTACAAATGAAAGTGGAAACAAATATAGAGAGTTGTGTATGGGCGATAAATATGGCAAAGCATGTCATGGTGATAAACAGGCAGTTGCAATCACAACTATTGGACTTGATACAACACAGATTGTCTTGtccaaacaacaacaacttgCAGAAAACTAGTAGAAAAAAGCTCACAATTCAGAATTTGGTACAGGAAGAGGAAAATCAGAAACCTtag 1428 0.3957 MCSASIQHAAETEKDIDGGGRKRSNGGMQRQKHENRGDDVGLGNGRKTASHTNLCLATFWLLVLEKSLPCGISIKQTRPQQPLLNYTVEVVGPLSCTNDGIYLVGGALSGNAYLWDVTNGKLLKTWRAHYKSLNCMLFSDDNSLLFSSSDDGMICVWSMISLLDVEEMRSSPPSLHCLLGHMSSITGLLTTPNSFFSILVSSSLDGTCKVWDFISGRLMQTQFYPFAITSIAIHQKERLLFCGTEKGTIIVNKLDIGQEEGPFIVTVGQPLELKGHNGAITALTSSQAGLISASEDCTICLWDIFSWEIIRRFSLQKGKVTNLVVVSRSSLLPTSNHRRVSNQYYVSPLDKYPQLINSFKGTTTLLSLCRHPRGNQTCINLRSTGLLRQRNSSSQKADVPMAMAVQMKVETNIESCVWAINMAKHVMVINRQLQSQLLDLIQHRLSCPNNNNLQKTSRKKLTIQNLVQEEENQKP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1485 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 159 IPR001680 GO:0005515
Ssu6g1485 475 SUPERFAMILY WD40 repeat-like 94 375 IPR036322 GO:0005515
Ssu6g1485 475 PANTHER WD-REPEAT PROTEIN 18 77 465 IPR045227 -
Ssu6g1485 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 159 - -
Ssu6g1485 475 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 77 465 - -
Ssu6g1485 475 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Ssu6g1485 475 PRINTS G protein beta WD-40 repeat signature 145 159 IPR020472 -
Ssu6g1485 475 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Ssu6g1485 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Ssu6g1485 475 Gene3D - 45 224 IPR015943 GO:0005515
Ssu6g1485 475 Gene3D - 225 340 IPR015943 GO:0005515
Ssu6g1485 475 MobiDBLite consensus disorder prediction 10 41 - -
Ssu6g1485 475 Coils Coil 453 473 - -
Ssu6g1485 475 MobiDBLite consensus disorder prediction 1 46 - -
Ssu6g1485 475 SMART WD40_4 171 212 IPR001680 GO:0005515
Ssu6g1485 475 SMART WD40_4 215 253 IPR001680 GO:0005515
Ssu6g1485 475 SMART WD40_4 79 116 IPR001680 GO:0005515
Ssu6g1485 475 SMART WD40_4 119 158 IPR001680 GO:0005515
Ssu6g1485 475 SMART WD40_4 266 303 IPR001680 GO:0005515
Ssu6g1485 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 312 IPR001680 GO:0005515
Ssu6g1485 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 221 IPR001680 GO:0005515
Ssu6g1485 475 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Ssu6g1485 475 Pfam WD domain, G-beta repeat 272 303 IPR001680 GO:0005515
Ssu6g1485 475 Pfam WD domain, G-beta repeat 120 158 IPR001680 GO:0005515
Ssu6g1485 475 Pfam WD domain, G-beta repeat 175 212 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1485 Ssu-Chr6 24392394 24401247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1485 103 315 U-box Gene Family AT1G04510 25.000 7.24e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1485 K14829 - gmx:102662801 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1485 6 24392394 24401247 Ssu6g1485 6 24392394 24401247 ECH