Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1484 ATGGCCACTTGTGCTTCTCTCTCCCTCTGTCCTCACACTTTCTGTTGCCGGCACCGCCCTTACCCTACGCGCCGTTCCATTACTTGCTCTCTCTCCTCCTCTTCCCTCCCAGATATGGATGGACCTAAAGTACTGCGGAAAAGATCAAGAAGAATAGAAGGTCCTAAGAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTACGATCGCTATATCCTCGTTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGCAAATGGAGACACAAAATTGAAGCAGTTGTTATAACACATGGTCATGAAGATCATATTGGTGCATTACCTTGGGTCATCCCAGCATTAGATTCTCATACGCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGACTAGTGCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGGGGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGAATATTTCAGCTGCTAAAGGAAGGGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGTTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCTACTCTGGTAAAAGCGGAAGATATTGATGCTTATGCACCAAAGGATTTGCTTATTGTAACAACGGGTTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTACACACATCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTTGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAATAGAAGAGTTCTCTCTAATGGTTTCATTTCACTTGGAAAAGAGAATTTGCAGTTGATGTATAGTGATGGAGAGAAAGCATTTGGTACATCAAGCGAACTCTTTATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATAGTGGTTAGCATGGAAATATTTCGCCCTCAAAATTTAGACAGTCCAGTTGAAAACaccttaaaaggaaaaataagaattacCACAAGATGCCTGTGGCTTGACAAGGGGAAGCTGTTGGATGCCCTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTGTTGAGAAAAATGGTAAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACACAAGGTTGTCTGGAAAATTCCATGTGGATGGGATATCAACATTGAGAAAAGTGGAGGATGGACATGGGAAAGAAAATCAgagaaccaaaatgaaaataagagGTGGTCTACTACCTACTGAAGACATCGCTATCTCAAGTGGAGCTGAGGATGACTTGTCTGATACGGAGGATTCAGATGAATTTTTGAAACCATTTGTTGAATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACGAAAGGAGAAGTTGTCTCCGCTGAAGGATGATGGTTCTCAAGACACTGAAGAATGCAATTCTGTATACACATCAAATTCTGAACCAAAATCTTCAAAATCGGCAAAGAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTGAATGACAGATTTCAAGTTGTGAAGGGGAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATATGAGcaggAGGTCAAGAATGAGaagaaaagcaagaaaaaatgGCCGTATCTTGAGGACATGGAAAGGATTCTGTCTGATAACGAGGCACTAGCaacaaaatga 2553 0.4027 MATCASLSLCPHTFCCRHRPYPTRRSITCSLSSSSLPDMDGPKVLRKRSRRIEGPKKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILVDAGVMFPDYDELGVQKIIPDTTFISKWRHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALGELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIWHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGEKAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVLRKMVRKYSGKRPEVIAIAIENPAAVLANEINTRLSGKFHVDGISTLRKVEDGHGKENQRTKMKIRGGLLPTEDIAISSGAEDDLSDTEDSDEFLKPFVESSPVEKSIKANNGYVPRKEKLSPLKDDGSQDTEECNSVYTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEQEVKNEKKSKKKWPYLEDMERILSDNEALATK 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1484 850 Pfam Myb/SANT-like DNA-binding domain 755 840 IPR044822 -
Ssu6g1484 850 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 850 - -
Ssu6g1484 850 Gene3D - 83 495 IPR036866 -
Ssu6g1484 850 CDD GT1 756 818 - -
Ssu6g1484 850 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 472 IPR011108 -
Ssu6g1484 850 CDD RNaseJ_MBL-fold 82 493 - -
Ssu6g1484 850 Pfam Beta-lactamase superfamily domain 103 238 IPR001279 -
Ssu6g1484 850 Gene3D - 758 819 - -
Ssu6g1484 850 MobiDBLite consensus disorder prediction 709 757 - -
Ssu6g1484 850 MobiDBLite consensus disorder prediction 735 749 - -
Ssu6g1484 850 PANTHER RIBONUCLEASE J 1 850 - -
Ssu6g1484 850 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Ssu6g1484 850 ProSiteProfiles Myb-like domain profile. 750 814 IPR001005 -
Ssu6g1484 850 SMART Lactamase_B_5a 91 288 IPR001279 -
Ssu6g1484 850 Gene3D - 280 430 IPR042173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1484 Ssu-Chr6 24360372 24377631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1484 757 842 Trihelix Transcription Factor Family AT2G38250 34.483 1.85e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu6g1484 Lactamase_B_2 6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1484 - - gmx:100814619 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1484 6 24360372 24377631 Ssu1g2357 1 65974222 65977074 PCT