Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1481 ATGGCGGCAGGGCGAAAAAGTGTTTCGCTGAGAAGAGACTCTTACAAATATAGTTCCACCAAGGGGTTTGATCACTATAAAAATGGTGCTCTCGGCGTGGAAGTGGGTGGATCTCGCAACCATCACTTCGCCCGTTCCGGAGAGAATGGGTTTCATGGTATAAAAGAGGAGAGGGAGCAAGGTGAGATCTGTGTTGAACATGGGGAATATGAGCACGCCTCTGGTTTGCCACCGccagagaagaagagaaagttTTCTCCAATCATCTGGGACCTGGCTGAGAAGGAAGGAAGAATCTCATCAAAGAGTAGGATTTTGGAAATTGCTGCTCTGTCTCCCCCTCGTGCATCTCTACAGAGCAGTACTGGAGCCAATGGTGTTGATTGTGGGGATGTTATGGAGGAGTCTTCGCCAGATTCCTCTTATGTGTTGCCTCTGGATCATTTGCGAAACTATAAACAAGATGTGGAGGTAGAGAATGATGTGCAAGGATGGACCATCACAAAGTCAAGATGGGCTTGTGATGGTCCCTCACCAAGGGGTGCTGATGATAAATTCAAGCATGGCAAAGTGAGCTCCAGTCCTGAAATTGTTGAATTCCATGGCAGTGGATGTTCGGAGAGCACAGTCACTAGATCATCAGGAAGCAGTGGAAGAGATCATTATCTGGGTCCTTCTATTGATGACGCAGATTCTGAAAAGGATTTTGTTACGGACTCCATGGTCGATGTTGAGGAACAAAGTAATTTTAGTGATTCTCCCTCTGATTCTGATGAGAGTGGTGGATTGATGCATGTGCGGAGAAATATAAACATGCTTCAGAGTTGCAGAAGTGTGTGCGAGTTTGagatgattaagaaaataaatgaaggaaCTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAGACTGGAGAAATAGTTGCATTGAAGAAGGTGAAGATGAACATCCAGAGGGATGGCTTTCCGTTGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAATCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGATGGTACTTTTATGGTAATGGAGTACATGGAATATGACCTTAAGGGGCTGATGGAGGCAAAGAAGCAGCCCTTTAGCATAAGTgaaattaaatccttaatacAGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAATTGGGTTATCCATAGGGACTTGAAGTCATCGAACATTCTGCTGAACCATGACGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGTGCTAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGGTGAATTTATTGCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCGAACCCTGGGTACACCAGATGAGAAAATTTGGCCAGGATTATCCAAATTACCTCGGgttaaagcaaattttgttaagcAACCGTATAATATGCTAAGGAAGAAGTTTCCAGCTGCTTCATTTACTGGTTTGCCAGTTCTATCTGAGCTGGGATTTGACTTGTTGAAGAACCTTCTAACTTATGACCCTGAAAAGAGGATAACTGCAGAAGCTGCTCTCCTTCATGATTGGTTCCGTGAAGCCCCACTTCCCAAATCTGATTTCAAGCCTATTTTTCCCTCTTGGCAGTGCTAG 1776 0.4206 MAAGRKSVSLRRDSYKYSSTKGFDHYKNGALGVEVGGSRNHHFARSGENGFHGIKEEREQGEICVEHGEYEHASGLPPPEKKRKFSPIIWDLAEKEGRISSKSRILEIAALSPPRASLQSSTGANGVDCGDVMEESSPDSSYVLPLDHLRNYKQDVEVENDVQGWTITKSRWACDGPSPRGADDKFKHGKVSSSPEIVEFHGSGCSESTVTRSSGSSGRDHYLGPSIDDADSEKDFVTDSMVDVEEQSNFSDSPSDSDESGGLMHVRRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIQRDGFPLSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGLMEAKKQPFSISEIKSLIQQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMGEFIAKEPLFRGKSELEQLDKIFRTLGTPDEKIWPGLSKLPRVKANFVKQPYNMLRKKFPAASFTGLPVLSELGFDLLKNLLTYDPEKRITAEAALLHDWFREAPLPKSDFKPIFPSWQC 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1481 591 Gene3D Transferase(Phosphotransferase) domain 1 364 582 - -
Ssu6g1481 591 ProSiteProfiles Protein kinase domain profile. 282 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1481 591 CDD STKc_CDC2L1 276 572 IPR045267 GO:0004674|GO:0005524|GO:0006468
Ssu6g1481 591 PANTHER CELL DIVISION PROTEIN KINASE 142 590 - -
Ssu6g1481 591 Pfam Protein kinase domain 282 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1481 591 SMART serkin_6 282 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1481 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Ssu6g1481 591 Gene3D Phosphorylase Kinase; domain 1 265 363 - -
Ssu6g1481 591 MobiDBLite consensus disorder prediction 202 232 - -
Ssu6g1481 591 MobiDBLite consensus disorder prediction 204 220 - -
Ssu6g1481 591 SUPERFAMILY Protein kinase-like (PK-like) 276 578 IPR011009 -
Ssu6g1481 591 PANTHER CYCLIN-DEPENDENT KINASE 142 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1481 Ssu-Chr6 24337585 24339793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1481 277 578 Core Cell Cycle Gene Families AT5G10270 44.025 2.39e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Ssu6g1481 Pkinase 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1481 K08818 - gmx:100788840 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1481 6 24337585 24339793 Ssu6g1481 6 24337585 24339793 ECH