Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1474 ATGGCCCGTCCTCTTTATAGTCCCTTCAAGGGCGAAATCGATAGTGAAACTCAAGCTTATCGTTTTGATATCTGCGAAACGGTTCACCATGCCTATTATCCTGATCAACCTATTTCACAGAATAGCACTCCTACCTTGGTCCTTACCTATTGCGATGGAACCATCAGGGATAACAAAAGGGTGAAGAGAACCGTGGGCATTCCCGAGTGGGGAGGAGATTTGATCACCTATCGGTTTAGTTTCCCCAACCCCAACACCACTAGAAATAGGAATAGCATATCAAAGCTCCATCTCAGAGATCACATACGGACTTACACCCAAAGATATCTTGCGGCTGAATCCGTAGAAGAGGCGGCAGAAGATACAAACAATTCTTCAGAAAGTGATTGGGGTGAAGAAGATGGTTGCGCTGATGGGGTAAGACTCGTTCAACTTCTAATAGCTTGCGCCGAAGCCGTGGCTTGCCGTGACAAATCACACGCTTCCATATTACTATCCGAACTTAAAGCCAATGCTTTAGTATTCGGGTCTTCACTCCAAAGAGTTGCCTCTTGTTTTGTGCAAGGCCTGACCGAGAGGCTCCATTTGATTCAACCAATTGGGCCCGTGGGCCCAGTGCCGCCCACGATGAATATTATGGACGCAGCCTCGGAAGAAATGGAGGATGCATTCAGGTTGGTTTACGAACTGTGTCCGCACATCCAGTTCGGACACTTTGTGGCTAATTCCGCAGTATTGGAAGCCTTTGAGGGTGAGAGTTTCGTCCATGTCGTAGACCTGGGCATGAGCCTCGGTCTCCGACATGGACACCAGTGGAGAGGACTCATTCAGAGCCTCGCCAACTGTGCAGGTGGCGACCGCGAACGCGATCGCCGCCTGCGGATTACGGGGGTGGGGCTTTGCGACCGACTCCAAACCATCGGCGATGAACTCTCCGTTTATGCAAATAACTTGGGCGTTAATTTGGAGTTCGCTTTGGTGAAAAAGAATTTGGAAAATTTGCGAGCTGAGGACATAGAGGTGAGGGAGGAGAGGTGCTTGTGGTGA 1047 0.4957 MARPLYSPFKGEIDSETQAYRFDICETVHHAYYPDQPISQNSTPTLVLTYCDGTIRDNKRVKRTVGIPEWGGDLITYRFSFPNPNTTRNRNSISKLHLRDHIRTYTQRYLAAESVEEAAEDTNNSSESDWGEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSLQRVASCFVQGLTERLHLIQPIGPVGPVPPTMNIMDAASEEMEDAFRLVYELCPHIQFGHFVANSAVLEAFEGESFVHVVDLGMSLGLRHGHQWRGLIQSLANCAGGDRERDRRLRITGVGLCDRLQTIGDELSVYANNLGVNLEFALVKKNLENLRAEDIEVREERCLW 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1474 348 ProSiteProfiles GRAS family profile. 133 348 IPR005202 -
Ssu6g1474 348 PANTHER DELLA PROTEIN RGL1-LIKE 84 343 - -
Ssu6g1474 348 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 84 343 IPR005202 -
Ssu6g1474 348 Pfam GRAS domain family 142 343 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1474 Ssu-Chr6 24183095 24184141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1474 134 342 GRAS Transcription Factor Family AT1G66350 36.321 3.89e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1474 GRAS 3.8e-42 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1474 - - gmx:100813548 474.167