Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1473 ATGGTTCACGGGCTTGGGCCCAAAGTGTTGGTGATGGTTGAGCAGGACTCGAGTCACAATGGGCCTTTTTTTCTCGGGAGGTTTATGGAATCGCTGCACTATTACTCTGCTATTTTTGACTCGCTGGATGTTATGTTGCCAAAGTACGACACTAAGCGGGCCAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATTGTGAGCTACGAGGGGCCGATGAGGATGGAGAGGCACGAGAGAGTGGACCAGTGGCGAAGGAGGATGAGCAGGGCTGGGTTTCAGGCTGCACCTGTTAAGATGGTGGCTCAGGCTAAGCAGTGGCTTCTCAAGAGCAAGGTTTGTGAGGGGTATACGGTTGTGGAAGAGAAGGGGTGCTTGGTTCTTGGATGGAAATCAAAGCCAATTGTGGCAGTTTCTTGCTGGAAATGCTGA 438 0.5068 MVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSYEGPMRMERHERVDQWRRRMSRAGFQAAPVKMVAQAKQWLLKSKVCEGYTVVEEKGCLVLGWKSKPIVAVSCWKC 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1473 145 ProSiteProfiles GRAS family profile. 1 144 IPR005202 -
Ssu6g1473 145 Pfam GRAS domain family 2 144 IPR005202 -
Ssu6g1473 145 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 144 IPR005202 -
Ssu6g1473 145 PANTHER DELLA PROTEIN RGL1-LIKE 2 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1473 Ssu-Chr6 24182592 24183029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1473 2 145 GRAS Transcription Factor Family AT1G50420 44.521 7.47e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1473 GRAS 6e-50 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1473 - - gmx:100815959 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1473 6 24182592 24183029 Ssu6g1473 6 24182592 24183029 ECH