Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1465 ATGGAAGGCACTGAATCCGATTCTGCGGCACTTTCCAATTCCAATGGCGAAGATTCCCAATTGGGGGCGCCTTCTTCCCCCGCTGCTCATCCTGAACCGTCAGATCTCAATCACGCGGCCGAGGAAGAGGCACTGTGTGGGGAGCTTCAGGGCAAGTTGGATGTGAAGGGTGGGGAGGAGAAAGCTCCGGACTTGAACGATGGTGGAGGAGTTTGCGACGAAGAAACTGGTAAGGGTGATGGAGATAGTAGGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGTGTTGGTGTTGATGTAGTTGCTGATGGTGATGATGGAGTggagaagaaggaagagaaaaacaGTGGTGTAACTCACCACTACCCTTTGAGGCCTGAGGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTTAATCACCCCATTAGGAGGAAAAGTCAGGTTGTTAAGGAGAAGGCAGGAGAAAGAGAAGAACCCACTGAGAGATCGGGCACAACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAATTTTCAACAGCACCGGCTCTAGAACTTAACTTTCTTGGCCTGCCTATTCGTCTGggagagagagagtgcCCTTATTACATGCGCACAGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGATCTATTTCATTACAAGGTGTATCACAACCACCTGTACCCTCCTGGTCTTCTCCAAGAACAATAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGGAGCATGCACCCACCTTCTACATTTGTCATGAACAACCCAGCAATCGATACGAATGTTTATATGCACCATCAAAAGCAGATGCCTGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGAttgcaaatttaaatctaattgtAAATTTCACCATCCCAAGAATCGGATTGCAAGTTTACCTCCATGCAGCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGCGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCAGAATGATGCCTGGACTTGGTCAGCAATCCTACTCAAACTCAGCTAGTGTTGAGGTGGCTGGTATAGGTGGAAGTGCAGGTGCGATGGATGCAACAATTCAGCAATCTGTGTAA 1410 0.4482 MEGTESDSAALSNSNGEDSQLGAPSSPAAHPEPSDLNHAAEEEALCGELQGKLDVKGGEEKAPDLNDGGGVCDEETGKGDGDSRGWETNSWNEEVGVGVDVVADGDDGVEKKEEKNSGVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKSQVVKEKAGEREEPTERSGTTECKYYQRSGGCKFGKSCKYNHTRGKFSTAPALELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGSISLQGVSQPPVPSWSSPRTINEASPFVPMMLSPTQGVSTQSSDWNGYQAPVYLPERSMHPPSTFVMNNPAIDTNVYMHHQKQMPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIASLPPCSLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPRMMPGLGQQSYSNSASVEVAGIGGSAGAMDATIQQSV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1465 469 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Ssu6g1465 469 SUPERFAMILY CCCH zinc finger 360 384 IPR036855 GO:0046872
Ssu6g1465 469 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Ssu6g1465 469 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Ssu6g1465 469 SUPERFAMILY CCCH zinc finger 125 154 IPR036855 GO:0046872
Ssu6g1465 469 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Ssu6g1465 469 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Ssu6g1465 469 SMART c3hfinal6 126 153 IPR000571 GO:0046872
Ssu6g1465 469 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Ssu6g1465 469 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Ssu6g1465 469 SUPERFAMILY CCCH zinc finger 220 246 IPR036855 GO:0046872
Ssu6g1465 469 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 66 - -
Ssu6g1465 469 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 74 469 - -
Ssu6g1465 469 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Ssu6g1465 469 Gene3D - 323 393 - -
Ssu6g1465 469 Gene3D - 168 253 - -
Ssu6g1465 469 Gene3D - 400 448 - -
Ssu6g1465 469 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
Ssu6g1465 469 Gene3D - 87 164 - -
Ssu6g1465 469 MobiDBLite consensus disorder prediction 1 91 - -
Ssu6g1465 469 MobiDBLite consensus disorder prediction 35 82 - -
Ssu6g1465 469 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g1465 469 SUPERFAMILY CCCH zinc finger 175 203 IPR036855 GO:0046872
Ssu6g1465 469 SUPERFAMILY CCCH zinc finger 399 427 IPR036855 GO:0046872
Ssu6g1465 469 PANTHER PROTEIN PHOSPHATASE RELATED 6 66 - -
Ssu6g1465 469 PANTHER PROTEIN PHOSPHATASE RELATED 74 469 - -
Ssu6g1465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 403 427 IPR000571 GO:0046872
Ssu6g1465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 245 IPR000571 GO:0046872
Ssu6g1465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 382 IPR000571 GO:0046872
Ssu6g1465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 198 IPR000571 GO:0046872
Ssu6g1465 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 152 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1465 Ssu-Chr6 24070242 24074213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1465 351 452 C2H2 Transcription Factor Family AT3G02830 49.057 5.78e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g1465 zf-CCCH 7.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1465 - - gmx:100786894 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1465 6 24070242 24074213 Ssu6g1465 6 24070242 24074213 ECH
Ssu6g1465 6 24070242 24074213 Ssu1g2328 1 65398612 65401065 PCT