Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1464 ATGGCGAGTTCGGAGGAGGTATTCCCGTGGCTGAAATCGCTGCCGGTGGCGCCGGAGTACCGCCCGACCGCGGCGGAGTTCCAAGATCCGATCGCCTACATATTCAAAATCGAGAAAGAAGCCTCTCAATACGGCATCTGCAAGATCATTCCCCCGGTTCCCCCTTCCCCTAAGAAAACCGCAATTGCCAACCTCACGCGCTCCCAGCCCACCTTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGCCCGCAGCCGGTGCGCCGCCCGGTATGGGACAGCGGCCACCACTACTCCCTCCGCGACTTCGAGGCCAAGGCCAAGGCCTTCGAGAAAGCCCACCTCAAAAAGTCCAGGCCCAGGCCCACCCCTCTCGAGCTCGAAACGCTCTACTGGAAGGCCACCTTAGACAAACCCTTCTCGGTGGAATACGCAAACGACATGCCCGGCTCCGCGTTCGGCAACCCCCGCGCGCGCGACGCCGCCGCGTGCGATAGCGTGGGCGACAGCGCGTGGAACATGAGGGCGGTTTCGCGGGCGAGCGGTTCGCTGCTGAGGTTCATGAAGGAGGAGATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCGATGCTGTTCAGCTGGTTCGCGTGGCACGTGGAGGACCACGACTTGCACAGCTTGAACTACCTTCATTTCGGCGCTCCGAAAACTTGGTACGGCGTGCCTAGGGATGCCGCCGTCGCGTTCGAGGAGGTGGTAAGGGTTCATGGCTACGGCGGAGAGATTAACCCTCTCGTTACTTTTGCTATTCTTGGCGAGAAAACTACGGTGATGTCGCCGGAGGTTTTTGTTGGCGCTGGTGTTCCCTGCTGCAGGCTGGTTCAAAATGCTGGGGAGTTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCGGCTAACATTGCGACTCCTGAATGGTTGAGATTTGCTAAGGATGCTGCGATTCGGAGGGCTTCCATTAATTATCCTCCCATGGTGTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCGTTGTGTTCTAGAATCCTTGGAGGCACCAGCGCTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTCGTAGAGAACAATGATCTGCTTCACTTACTCAGCAAAGGATCTGCTATAGTACTTCTCCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGCGTTGGATCACAACAACTGAAAGGGAACCCTGAGTTTTCTCTCAGTGTATGCAATTCTGAGGGAATGGATTCCTCAAAAGATTTTATTTCTGATGACCTGGTGTTCAACAAGAATCATGGAATCAAACAAGTAAAAGGTTTTTATTCTGTAAAAGAGAAGTTTGCTACATTGTGTGAAAGGAACAGGGTTTCGCCATTCAGTCCGAATGGTAACATATACACTTCAAGTTCAAAAACACTTCAAAGAGACACTGAAAAAGAAACCAGTCAAGGAGATAGGTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGTTTCTTTAACGATTGGATTGTTGGTTCTGGAGTAActagtaataaattttctattgcCCATGCAGATGCAATTATTCCCAAGCCAAACACATATACAGGATGTACAAAACAAAATGTGCGAAATGATTTATATGATGTTCCCGATGAATCTGTTGAGCACCGGACACAGATTGCTGATCAAAATTATGAGGAGGCTTTAAAttctgaaagaaaaaaaggtagtACAGCTCTTGCGTTATTGGCTTCGGCGTACGGAAATTCTTCTGACTCTGAGGAAGATCAGGGAGAATCAGATATTGCAGTTGATGATGATGAATTGAATGTAATAAACCATCCATCAGCAAGTAGATCTCAGGAGATGTCTAGTTCGCCTTCTCATTTTCAAGACTCCTATGATAGTCCCATGGTTAGACTTGATAAAGGAGATGATGTTCCTTCAAGAAGTATAGACAATTATGAGTATTATATGCACAAGAGAGTTGAGCGCATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCATAACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCATACTGATGAAGACTCATCTAGAATGCATATCTTCTGTCTAGAGCATGCTGTAGAAGTGGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAGGAACTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTTGCCGTGCACCAATTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGTCAAAGCTCTCCAGCAAGCTCACCCACAGAACCCAAGGTCTATCAGAGAAGGGCCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCTAATCAAGTCCATCCCCTTCTAGCAAAAAGAGATTCTGAAGATATTGAAGATGAGAAAAGCTTACTTGGGTGGCCAGTGCCTGATGAGAAAATTGAGAGGTCAGAAAGTAACCACAAAAGCAATACTACGATTAGAAAATCTGGTAGGAAAAGGAAAATGTCTGTTGAGAATGGAGGGACCAGGGAAGGAAGTTTTGCTGGGAGAGATTGGCTTTCAGATAATTCGATTGAAGATAAATCCAATCAAGATCAAAGGAGGATTCTTGGAAGTAAGCGAACCAAGCATATTGAGAGATTTGATACTGCTTCTGAAGGGGATTATTCACCTCTGCCACATCATAGAAAGCCTATAAGCAAGCATTCAGAATGCATTGAAAGTGATGCAGTTTCAGATGATTCGCTGGATGATGATTCTCGTATACAGCATTGGAGGAGGGCTAATGCCAATGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGATACAGCGGACTATGATTCTGATTGGCCGCGTAGGGGAGTGCTCAGCAACAAGCAAGatgcaatttcagatgattcATTGGGTGTTGGTTCTCTTCAGCTGGGCAGAAAGACTCCTAAAAGCAAGTATGACCAATACATTGCTGAAGAAAATGTGATTTCTGATGACCAAATGGAGGTTTATTTTCGGAAGCAGAAAGGGAAGATATCTAAAAGCAGACAACACAGATCCCTTTCTGCAAAAGATACAGCAATGTCTGATGATCAACTGGAGCACCAGATGCAGAAGCAGCAACGGAGGAATCCTAGAAACAGGCAAGACAAGTACCTTGCAGGAGAGGATATTATTTCTGACGACCAACTGGAGGGTCATTTTCGCAAGTACCAAAGAAGGATTTCTAAAAACAGGCAAGCCAAGTGTGTCAATGAGGAAGATGTAATGTCTGATGACCAGTTGGAGGATCACTTTCAGAAGCCCCAAAGGAGTGTTCGAAGGAGCAGGCAAAATAAATACAGTGATAGAGAAGTTATGGATGACTCCGCAGAAAATAATTCTCATCTGTATAGAACCCCTAAAAGGAAGCAAGCTAAATGCATGGATGAAGACAATATAAATTCAGATGATCAAATGGAAGATATTTCTCATCAGCAGCTCAAAAGAACTCTTCGAAGTAAGCAATCTAAATCGCAGATTCTTCAACCAATGAAACAAACTAACCCTCTCCGTGTGAGAAACAAGACATCCCGGCCTGTGAAACGAGGTGCTCATATGCTAATGAAAACAAAGGCTGCTCGGCGAATGAAGCAGCAGCCTCGTGCATGGAATAATCAATCTGGCAACTCCAGAGATTCAACATTACATGTTGAAGAGGAGGAAGATGGTGGACCTAGCACACGACTTAGGAAGAGAGTCCCAAAAATTCAGGAATCTGgaggaaaattaaaagaaaaggaaaccaaaaggaaaaaggtgaaaaatgcAACAGCTGCGAAGGTTTCAGCTGGCCATGCCAAAATAAAGGAAGAGGAATCAGGATACCAGTGTGACATTGAGGGGTGTACCATGAGTTTTGGATCTAAACAAGAGCTGGTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCACGTACTGAGCACATTCGAGTCCATACTGGTGCTCGTCCTTATGTATGTGCTGAACCAGGGTGTGGACAAACGTTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAACAAAGAAGACTCGTTGA 4641 0.4482 MASSEEVFPWLKSLPVAPEYRPTAAEFQDPIAYIFKIEKEASQYGICKIIPPVPPSPKKTAIANLTRSQPTFTTRQQQIGFCPRRPQPVRRPVWDSGHHYSLRDFEAKAKAFEKAHLKKSRPRPTPLELETLYWKATLDKPFSVEYANDMPGSAFGNPRARDAAACDSVGDSAWNMRAVSRASGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRILGGTSAEPRSSRLKDKRKGEGETVIKELFVQDVVENNDLLHLLSKGSAIVLLPRSSSDFSVCSKLRVGSQQLKGNPEFSLSVCNSEGMDSSKDFISDDLVFNKNHGIKQVKGFYSVKEKFATLCERNRVSPFSPNGNIYTSSSKTLQRDTEKETSQGDRLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWIVGSGVTSNKFSIAHADAIIPKPNTYTGCTKQNVRNDLYDVPDESVEHRTQIADQNYEEALNSERKKGSTALALLASAYGNSSDSEEDQGESDIAVDDDELNVINHPSASRSQEMSSSPSHFQDSYDSPMVRLDKGDDVPSRSIDNYEYYMHKRVERIMTPFDYSVKSEDHNNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEVEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYMWKNTVYRHANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLCRAPIYSKQMPYNSVIYNAFGQSSPASSPTEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDIEDEKSLLGWPVPDEKIERSESNHKSNTTIRKSGRKRKMSVENGGTREGSFAGRDWLSDNSIEDKSNQDQRRILGSKRTKHIERFDTASEGDYSPLPHHRKPISKHSECIESDAVSDDSLDDDSRIQHWRRANANEAKFIDSDVVSDDTADYDSDWPRRGVLSNKQDAISDDSLGVGSLQLGRKTPKSKYDQYIAEENVISDDQMEVYFRKQKGKISKSRQHRSLSAKDTAMSDDQLEHQMQKQQRRNPRNRQDKYLAGEDIISDDQLEGHFRKYQRRISKNRQAKCVNEEDVMSDDQLEDHFQKPQRSVRRSRQNKYSDREVMDDSAENNSHLYRTPKRKQAKCMDEDNINSDDQMEDISHQQLKRTLRSKQSKSQILQPMKQTNPLRVRNKTSRPVKRGAHMLMKTKAARRMKQQPRAWNNQSGNSRDSTLHVEEEEDGGPSTRLRKRVPKIQESGGKLKEKETKRKKVKNATAAKVSAGHAKIKEEESGYQCDIEGCTMSFGSKQELVQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKTR 1546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 670 690 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 951 1047 - -
Ssu6g1464 1546 ProSiteProfiles JmjC domain profile. 168 337 IPR003347 -
Ssu6g1464 1546 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1537 - -
Ssu6g1464 1546 Gene3D Classic Zinc Finger 1482 1506 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 1369 1410 - -
Ssu6g1464 1546 Gene3D Classic Zinc Finger 1507 1546 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 1150 1199 - -
Ssu6g1464 1546 ProSitePatterns Zinc finger C2H2 type domain signature. 1456 1478 IPR013087 -
Ssu6g1464 1546 ProSiteProfiles Zinc finger C2H2 type domain profile. 1484 1513 IPR013087 -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 1231 1269 - -
Ssu6g1464 1546 ProSitePatterns Zinc finger C2H2 type domain signature. 1516 1540 IPR013087 -
Ssu6g1464 1546 SMART JmjN_1 16 57 IPR003349 -
Ssu6g1464 1546 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1537 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 496 520 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 951 966 - -
Ssu6g1464 1546 ProSiteProfiles Zinc finger C2H2 type domain profile. 1454 1483 IPR013087 -
Ssu6g1464 1546 SMART cupin_9 168 337 IPR003347 -
Ssu6g1464 1546 SMART c2h2final6 1514 1540 IPR013087 -
Ssu6g1464 1546 SMART c2h2final6 1431 1453 IPR013087 -
Ssu6g1464 1546 SMART c2h2final6 1454 1478 IPR013087 -
Ssu6g1464 1546 SMART c2h2final6 1484 1508 IPR013087 -
Ssu6g1464 1546 SUPERFAMILY beta-beta-alpha zinc fingers 1470 1512 IPR036236 -
Ssu6g1464 1546 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Ssu6g1464 1546 Pfam jmjN domain 18 51 IPR003349 -
Ssu6g1464 1546 Gene3D Cupin 10 341 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 1349 1414 - -
Ssu6g1464 1546 SUPERFAMILY Clavaminate synthase-like 182 340 - -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 996 1047 - -
Ssu6g1464 1546 Pfam JmjC domain, hydroxylase 201 319 IPR003347 -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 644 703 - -
Ssu6g1464 1546 ProSitePatterns Zinc finger C2H2 type domain signature. 1486 1508 IPR013087 -
Ssu6g1464 1546 Gene3D Classic Zinc Finger 1452 1481 - -
Ssu6g1464 1546 SUPERFAMILY beta-beta-alpha zinc fingers 1502 1536 IPR036236 -
Ssu6g1464 1546 MobiDBLite consensus disorder prediction 1160 1199 - -
Ssu6g1464 1546 ProSiteProfiles Zinc finger C2H2 type domain profile. 1514 1545 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1464 Ssu-Chr6 24055333 24062159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1464 1136 1545 C2H2 Transcription Factor Family AT3G48430 38.215 4.28e-69 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g1464 JmjC 1.4e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1464 - - gmx:100775813 2082.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1464 6 24055333 24062159 Ssu2g2865 2 89756987 89781170 PCT
Ssu1g2327 1 65371467 65380923 Ssu6g1464 6 24055333 24062159 PCT