Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1463 ATGGCTTCGAGCGAGGGGTTTCTGACGGATGGGCAGAGGGAAATGCTAAAAATTGCGAGTAAAAATGCGGAGAATCTGTCTTCGTCTCCGAAGTCTCCGTCGTCCTTGCTTTCTGACCATCATGTAAAAGCCCCTGCTGGTGGTAAGGCACAAACCACTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCGGGAAAGTATGTGCGGGTGAAGAAGGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACAAATGTTGATTCTCACATAGACCGGAATGATCCAAATTATGACAGCGGCGAGGAACCATATCAGCTGGTTGGATCTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTAACCATCATAGAGGAATATTTCAGTAATGGGGATGTGGATTTGACAGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATACTATCCATACTTCATTAAACGCTTGGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCCTCTGTTCTGCTTTCAGCATTGTATGCTGATGTTATCAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTTCTTGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGACATCCTTGCGTTATTTTTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAACGGAGTTCAGGTAATCCAGACTGCTGAAAAGAGTTATCTCTCGGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCGTTCTTCCATCATGAGGTTGTCAAGAGGGCTCTGGTACTTGCCATGGAGATTCGATCAGCAGAACCTCCAATGTTGAAGTTATTAAAAGAAGCAGCAGAAGAAGGACTTGTTAGCTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAGTCCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAGGCATTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGGGAAATCCATGTTGAAGATGAGAAGGTGAGGAAGTATAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTTTCTGATGACATTCCTGAACTGATTCGTAGTCTTGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAGAacagagaaaaggaaatggCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTTATTGATGATGTATTGGCCCCACTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGAATGGCTCGGTCACTCATTGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGCTGGGGTGGAGGGACGGGGTGGGCTGTGGAGGATGCTAAGGACAAGATCATGAAGCTATTGGAGGAGTACGAAAGTGGGGGGGTGGTGAGTGAAGCATGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAACCATGAGGTAGTGAAGAAAGCTTTGATTATGGCCATGGAGAAAAAGAATGATCGGATGCTAGATCTACTACAAGAGTGCTTTAGCGAAGGCCTGATCACCATTAATCAGATGACTAAAGGTTTCACCCGTATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTGGCTTCTACGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCATCATTTGATTCGCCTGTCACAGATGTCTAA 2109 0.449 MASSEGFLTDGQREMLKIASKNAENLSSSPKSPSSLLSDHHVKAPAGGKAQTTGIAVRHVRRSHSGKYVRVKKDGAGGKGTWGKLLDTNVDSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVTIIEEYFSNGDVDLTASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSNGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPPMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIHVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPSFDSPVTDV 702
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1463 702 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Ssu6g1463 702 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Ssu6g1463 702 MobiDBLite consensus disorder prediction 21 36 - -
Ssu6g1463 702 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Ssu6g1463 702 SUPERFAMILY ARM repeat 417 575 IPR016024 -
Ssu6g1463 702 MobiDBLite consensus disorder prediction 1 55 - -
Ssu6g1463 702 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Ssu6g1463 702 SUPERFAMILY ARM repeat 579 696 IPR016024 -
Ssu6g1463 702 Gene3D - 272 405 - -
Ssu6g1463 702 Gene3D - 570 699 - -
Ssu6g1463 702 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Ssu6g1463 702 Gene3D - 114 262 - -
Ssu6g1463 702 Gene3D - 411 563 - -
Ssu6g1463 702 Pfam MA3 domain 286 397 IPR003891 -
Ssu6g1463 702 Pfam MA3 domain 421 530 IPR003891 -
Ssu6g1463 702 Pfam MA3 domain 584 691 IPR003891 -
Ssu6g1463 702 Pfam MA3 domain 122 233 IPR003891 -
Ssu6g1463 702 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 694 - -
Ssu6g1463 702 PANTHER PROGRAMMED CELL DEATH 4 1 694 IPR039778 GO:0045892
Ssu6g1463 702 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
Ssu6g1463 702 SMART ma3_7 420 531 IPR003891 -
Ssu6g1463 702 SMART ma3_7 286 397 IPR003891 -
Ssu6g1463 702 SMART ma3_7 122 233 IPR003891 -
Ssu6g1463 702 SMART ma3_7 583 692 IPR003891 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu6g1463 Ssu-Chr6 24036981 24041490 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1463 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 8.75e-10 60.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1463 - - gmx:100809081 1295.41
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1463 6 24036981 24041490 Ssu6g1463 6 24036981 24041490 ECH