Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1462 ATGCCTCAATGGGGTTGCTTTTGGTTCTTGTCTGATGAAGGGTTGGTTTGCATTGTTTCTAGTGGGTTCTGGTTATACAAGAGTAAGGCAGCGATGGATGGTAGGAGGCATTCTGTTGACATTCCTATTTCCAAAACTCTTGTGGCGCTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTAATGGCATTAGCACACTTTCTCCTTTGATTGATGATGGAGATTGGGAAAATGGTTCTAGTAATGGGGTTTCTCTGAGGTTCCTGAATGCTTCTCATGGATGTGATTGTGATGGTAATGGTTTCTTAAGATCaaatagtttagattttaagGGGCAAAGAGAGCAGGACACTGCTGAGTTTGAATTGGACAGGTTGAACTGTGAGATGAACTATTGTGGGATCTCATGTCAGGAAGGGCAGCAAGATGATGGACTAGTATACTCTAATCCTAAGCAGCACGGTATTTCTGGAAATAAATCACCAAATGAAAGCTGTTGTAGCAATCATGAAGGTAGAATATTGGATTTGGTTTCCGTCGCTCCTCCTTGTAATCATTTGAAGGATTGGGATTCATGCTATTTGTCAACTGCAATAAGAGTAGATCACTCAAAGTCAGCAAGAAAATCACTACGCAAGAATCAAGTGAAACCATCTGAAGTGATTGATGATATTGCAAGCCATGTAGGAAGTCAACAATGCCTTTCTGTTCGTGATGCTCTCTCAGCTCATAGTGCCTCAGAACACATCACTCAAGATGTTGATGTTTTTGATAATCACAATGGATGTGGAATAAGGTGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAATAGAAGGCCTTCCCTTGATATTGCAGCATGTAAATGAGAAGGATCTCAATGGACATAGAAGCATGAGACACATTGGTGGTGAAATTAGTCCAACTCTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCAAAATCTTTCAGTGATTTAGTTGGACAAAATGTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTAGAGAAAGGATATCctcattttatctctttcatggACCACGCGGCACAGGCAAGACCTCTGCGTCTAGAATATTTGCTGCTGCACTGAATTGCCTCTCCCCTGTGGAGCAAAAGCCGTGTGGTCTGTGTAGAgaatgtgttttgtttttttctggAAGACGTAAAAATGTTAAGGAAGTGGATTCTTTGAGAATCAATCGCACCGACAAGGTTAAGTCCCTTGTTAAGAATGCATGTATTCCTCCAGTTTCCGCGCGATTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGCATGGGGAAACATGGGCGTCTCTTTTGAATAGCCTAGAGAATGTTTCTCCACATGTGGTTTTTGTGATGATCTCTCCTGATTTGGATAAGCTTCCTCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTCGCAAAGATTAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTGTTGAAGAAGGTCTCGAATCTGAACAAGTTGCTTTGGACTTTATTGCTGCTAGATCCTGCGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAGAATTACTATTTCCTTAGTCCACGAGCTTACGGGGGTCATTTCTGATGATGAATTGCTTGATTTACTGGACCTGGCTTTATCATCTGACACTTCAAATACAGTTATAAGAGCTCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAGCTTATATCACAATTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAGCTTGGTGGTTCTGAAATCAGAAGAAGATTTTGTGATAGATATACCTCGGAAGCAGACCTGCAGAAGCTAAGTCATGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAAAATTTCCAAGAATCAAACAACATGCTTCACTGCAGCTCTTCTACAGTTAAGCTCCGTAGAATATTCATCTGCGGATGCAAATGATACAAAGTTGTGTACAAGAGCTGCATCCAATAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTACTACTACAGGTCAATGTGATGATAAGTCATATAGATTAGGAGTACAGGAGGATCACAGGGGGACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCCGGCTCAAAACATTTCTCAGGAAACAAGGAAAGTTGTCTTCAGTTTGTATTAATCAAGGTGGTGCAGTTGCTGAGTTGGAGTTCCACCATCTTGACTATGTAAGTAGGGCTGAGAAGTCATGGAGGCTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAATTATGTACCATCTTGTACTTCGGATTCTAAGTATGCTAAATTGAAGAGGTCATCTTTCAATTTCTTCAATTGTTCCCGTAGAATTCGTTGGAAATCTTTATCATCTAATGATCAAGGAAGTGAATCAGACTATGCTGATTACACCTCTCAAAAGCTCATGATGAAGGATCAAAGTCTAATTTGTTCCTCTGGTTGCACTTCTCAAGTGCCACCATTTGAGTCCTACCATGGGATTCAGGTTGTGACAACTTTGAGAAGTAGTGAAGGGAATTTGCTAAGCTCAgggaaaatgtttttgaatagGTCAGGTCAAGAGACTGCAAGGATTTCTTGTTCTAGAGCTGATTCTCTCAAGGAAGAGGGACGCAATTATGAACATCTGGCTTCATCAACCCTTGACTTAGATAATCAGTCTGACTGTTTTCCTCGAACCCGCTGGCTTCGTAAAAAGTTCTGTTCTTCATATGCATCACATCAGAAGGATCTTGTTTTACCTATCAACAAGTTCAAATGTTCTGAGACTTATAGATATGATCTGGAACGCTGTGTCTTTTCCCACAGCTCTAACAACTGCACCGAATCTGCTGAGGAAAATTATTTAATAGCTTCTCGGTATTTGAGGTTAGGTTCCTATGTTGGTCCTAATACAACAAGCAACTTTTTAGGTGTTGGACTATATGATGGAGGTAGTACAATGTTTGATGATAagAGtacccttaattatatatttaacatgaCAAAAGCAAGTTTTCGAAGCCCAACCTACGTGAAGACACACTTACTTCTCCTCCTTCAAAAACACAATCTAGGTTGCACTTCTAGGAATCACTTTTTGGCAATGACATGGGCAATTGCAAATAATGAGAAATATTACACCATTGAAGAATGCTCAAAACAAACACCTCATGAAATAGTTGTTGACATCACGCTTGCCATTTGTACCTACCTTGGATGA 3369 0.3948 MPQWGCFWFLSDEGLVCIVSSGFWLYKSKAAMDGRRHSVDIPISKTLVALRRVRSLRDPSTNGISTLSPLIDDGDWENGSSNGVSLRFLNASHGCDCDGNGFLRSNSLDFKGQREQDTAEFELDRLNCEMNYCGISCQEGQQDDGLVYSNPKQHGISGNKSPNESCCSNHEGRILDLVSVAPPCNHLKDWDSCYLSTAIRVDHSKSARKSLRKNQVKPSEVIDDIASHVGSQQCLSVRDALSAHSASEHITQDVDVFDNHNGCGIRCCWSKSPRFRESNHYSEIEGLPLILQHVNEKDLNGHRSMRHIGGEISPTLETPRSLSMKFRPKSFSDLVGQNVIGKSLLGAISRERISSFYLFHGPRGTGKTSASRIFAAALNCLSPVEQKPCGLCRECVLFFSGRRKNVKEVDSLRINRTDKVKSLVKNACIPPVSARFKVFIIDECQLLHGETWASLLNSLENVSPHVVFVMISPDLDKLPRSAVSRAQRYHFAKIKDADIASRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKRITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFCDRYTSEADLQKLSHALRILSETEKQLKISKNQTTCFTAALLQLSSVEYSSADANDTKLCTRAASNRDGDICSTSPKGDSLEHLTTTGQCDDKSYRLGVQEDHRGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSVCINQGGAVAELEFHHLDYVSRAEKSWRLIASSLQFILGCNLELRINYVPSCTSDSKYAKLKRSSFNFFNCSRRIRWKSLSSNDQGSESDYADYTSQKLMMKDQSLICSSGCTSQVPPFESYHGIQVVTTLRSSEGNLLSSGKMFLNRSGQETARISCSRADSLKEEGRNYEHLASSTLDLDNQSDCFPRTRWLRKKFCSSYASHQKDLVLPINKFKCSETYRYDLERCVFSHSSNNCTESAEENYLIASRYLRLGSYVGPNTTSNFLGVGLYDGGSTMFDDKSTLNYIFNMTKASFRSPTYVKTHLLLLLQKHNLGCTSRNHFLAMTWAIANNEKYYTIEECSKQTPHEIVVDITLAICTYLG 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1462 1122 SUPERFAMILY post-AAA+ oligomerization domain-like 564 667 IPR008921 GO:0003677|GO:0006260
Ssu6g1462 1122 Gene3D - 315 492 IPR027417 -
Ssu6g1462 1122 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 135 948 - -
Ssu6g1462 1122 CDD AAA 335 485 - -
Ssu6g1462 1122 Gene3D - 495 557 - -
Ssu6g1462 1122 Gene3D - 558 671 - -
Ssu6g1462 1122 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 135 948 - -
Ssu6g1462 1122 Pfam DNA polymerase III, delta subunit 337 494 - -
Ssu6g1462 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 545 IPR027417 -
Ssu6g1462 1122 CDD HLD_clamp_pol_III_gamma_tau 494 557 IPR045085 -
Ssu6g1462 1122 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 321 667 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1462 Ssu-Chr6 24023030 24034375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1462 312 606 Core DNA Replication Machinery Family AT1G21690 23.684 3.07e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1462 - - pvu:PHAVU_003G207500g 1593.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1462 6 24023030 24034375 Ssu1g2321 1 65296788 65300527 PCT