Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1461 ATGGATATCAAGCTCAAGATTTTCCAAGATGCCtctttaattaaaAACCCCGAATTGGTGGCCCAGGAAGTAAACAGGAAAATCAATGCCTCTGTAGGTAGGAGGAATTTGGGGTACCTGTCCTGTGGGACAGGCAACCCCATTGACGATTGTTGGAGGTGTGACCCCAACTGGGAGAAGAACAGGCAGAGGCTAGCGGATTGCGCAATTGGTTTTGGCAAAAACGCCATTGGTGGAAGGGACGGGAAAATCTACGTGGTCACCGATTCCGGCGACGACGACCCGGTGACCCCCAAGCCGGGGACTCTCCGGCATGCGGTGATTCAAGACGAGCCGCTGTGGATCATATTCGCGAGAGACATGGTGATTAAGCTGAAGGAAGAGCTCATCATGAACTCCTTCAAGACCATTGACGGAAGAGGCACCAGCGTGCACATTGCCGGTGGTCCATGCATTACTATACAGTTTGTGACCAATGTCATAATCCACGGCTTACACATTCATGACTGTAAGCAAGGCGGGAATGCTATGGTGCGGGACTCCCCACGCCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCCATCTTTGGAGGAAGCCACATTTGGGTTGACCATTGCTCTTTGTCTAACTGTAACGATGGGTTAGTTGATGCCATCCATGGCTCTACCGCGATTACCATCTCCAACAATTACATGACTCAGCATGATAAGGTCATGCTTTTGGGTCACAGTGATTCGTACACTCAAGATAAGAACATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGGCTCGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCTATTGGGGGAAGTGCTGACCCAACCATCAATAGCCAAGGCAACAGGTTTGCTGCACCCGACGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAGGGGGTGGAATTGGAGGTCAGAAGGGGACCTAATGGTAAATGGTGCGTTTTTCACAGCATCGGGGGCTGGAGCCTCCTCTAGCTATGCAAGAGCTTCGAGCTTGAGTGCAAGGCCATCTTCACTAGTGGGGTCCATAACAACTGGTGCGGGTGCACTCAACTGTAGGAAGGGTTCCCGTTGCTGA 1185 0.5063 MDIKLKIFQDASLIKNPELVAQEVNRKINASVGRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVTPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGTSVHIAGGPCITIQFVTNVIIHGLHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTQHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFAAPDDRFSKEVTKHEDAPESEWRGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALNCRKGSRC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1461 394 Pfam Pectate lyase 126 311 IPR002022 -
Ssu6g1461 394 SMART amb_all 120 317 IPR002022 -
Ssu6g1461 394 PANTHER PECTATE LYASE 10 391 - -
Ssu6g1461 394 Gene3D - 45 387 IPR012334 -
Ssu6g1461 394 SUPERFAMILY Pectin lyase-like 28 389 IPR011050 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 68 85 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 128 144 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 192 213 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Ssu6g1461 394 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Ssu6g1461 394 PANTHER PECTATE LYASE 18-RELATED 10 391 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1461 Ssu-Chr6 23986948 23989908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1461 14 394 Polysaccharide Lyase AT5G63180 82.507 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1461 K01728 - gmx:100101868 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2319 1 65225492 65228135 Ssu6g1461 6 23986948 23989908 ECH
Ssu9g1759 9 54886947 54898281 Ssu6g1461 6 23986948 23989908 ECH
Ssu6g1461 6 23986948 23989908 Ssu6g1461 6 23986948 23989908 ECH
Ssu6g1461 6 23986948 23989908 Ssu1g2319 1 65225492 65228135 PCT