Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1460 ATGGCCCCCCAAACCATATCCATTGACTACCAGAGCACCCGGGCCTTACCCGAACCCGATGTTTTCATACACACTTCCCACGGAACACGCATTCCAGCTCACGCAGGCATTCTGGCTTCGGTGTCGCCGGTTTTGGAGAACTTCATAGATCGGCCACGTAAGCATCGGAGCTTCGAAACAATAATCCAGATCCACGGCGTCCCTTGCGACGCCGTCACCGCCTTCGTCAGATTCCTCTACTCCTCCCGGTGCACGGAGGAGGAGATGGACAAGTACGGGATGCACCTCCTGGCGTTGTCGCACGTGTACATGGTGCCGCAGCTGAAGCAGAGGTGCATCAAGGGTTTGACCCAGCGCTTGACCACGGACAACGTCGTGGACGTGCTGCAACTAGCGAGACTCTGCGACGCACCGGATCTCCACCTCCGCTGCATGAAGCTCCTAGCCAATAATTTCAAGGCGGTCGAGGCCACCGAGGGCTGGAAGTTCCTCGTCAAACACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAAcgAGGAAAAAGAAATCGAGGAGGCATAGGGAAGAGCAGGGGCTGTACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGCACCAACATTGGACCGTACGATGCGGAGGTGAAGAGAGAGAGGAGGCCCTGCGGCAGATTCGCCACGTGTCAGGGTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCCAGAGGAGGGTGAGCGGTGGGTGCTTGCAGTGCAAGCGAATGTGGCAGCTCTTTCGACTTCATTCCTATGTTTGTCACCAAACCGATTCCTGCAAGGTTCCTTTTTGCagGCAATTTCAATTGAGCATgcagcaaaagacaaggaaagATGATCCTAGGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCCTTGTCTCTGCCAAAGAGGAAGCGAGATGAGGAAATGAGAGTGACGATAAACAATCCCGGGATTAGAAGCTATAAATTACTATGA 1050 0.5362 MAPQTISIDYQSTRALPEPDVFIHTSHGTRIPAHAGILASVSPVLENFIDRPRKHRSFETIIQIHGVPCDAVTAFVRFLYSSRCTEEEMDKYGMHLLALSHVYMVPQLKQRCIKGLTQRLTTDNVVDVLQLARLCDAPDLHLRCMKLLANNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRRHREEQGLYAQLSEAMECLEHICTEGCTNIGPYDAEVKRERRPCGRFATCQGLQVLIRHFATCQRRVSGGCLQCKRMWQLFRLHSYVCHQTDSCKVPFCRQFQLSMQQKTRKDDPRWKLLARKVASAKVMSSLSLPKRKRDEEMRVTINNPGIRSYKLL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1460 349 CDD BACK 121 168 - -
Ssu6g1460 349 Gene3D Potassium Channel Kv1.1; Chain A 17 120 IPR011333 -
Ssu6g1460 349 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 347 IPR044513 -
Ssu6g1460 349 Pfam TAZ zinc finger 203 289 IPR000197 -
Ssu6g1460 349 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 1 347 - -
Ssu6g1460 349 Pfam BTB/POZ domain 19 119 IPR000210 GO:0005515
Ssu6g1460 349 Gene3D - 121 192 - -
Ssu6g1460 349 ProSiteProfiles BTB domain profile. 19 88 IPR000210 GO:0005515
Ssu6g1460 349 SMART BTB_4 19 120 IPR000210 GO:0005515
Ssu6g1460 349 Gene3D TAZ domain 193 317 IPR035898 -
Ssu6g1460 349 SUPERFAMILY POZ domain 20 119 IPR011333 -
Ssu6g1460 349 SUPERFAMILY TAZ domain 194 292 IPR035898 -
Ssu6g1460 349 SMART TAZ_2 196 290 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1460 Ssu-Chr6 23951482 23954850 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Ssu6g1460 BTB 3e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1460 - - gmx:100807120 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1460 6 23951482 23954850 Ssu6g1460 6 23951482 23954850 ECH
Ssu6g1460 6 23951482 23954850 Ssu1g2317 1 65149148 65154091 PCT