Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1453 ATGTCCCTCACAACCATGCCTGCGTTCAAGTCCATCACAATGGCAGAATCGTGCCTTCTATCTCTCCCTTCCCTCTTCTATGCCAAAAACAAATCCCCTTCTCTCTCAATTCCCTCTAAGCCCCTCAACCTCCAGCTTCCATGCTCCTACTCTTCGCTCCTTCCCCTCACCACCGGGACAACGCGTCATTCCCCTCTCCTCACATTCGTGGCCCAGACATCGGATTGGGCCCAAGAAGAAGAAACACCGTGGGAGAACCAAGCCGACTCCACGTGGGGAACTGAAGAGGGTGGGGATGATGGCGAGGAGGAAGTAGCTGCAGGGGGTTTCGCTGAACCAGTTGAAGAAGTGAAGATCTTCGTCGGGAACTTACCTTTCGACGTTGACAGCGAGAAATTGGCGTCGCTTTTTGAGCAGGCTGGCACCGTTGAGGTTGCCGAGGTCATTTATAATAGGGTCACTGACCGGAGTCGCGGGTTTGGATTTGTTACCATGAGTACACTTGAAGAGGTTGAGAAGGCTGTCCAGATGTTCAGTGGCTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAATGCAGCCTGAACGCCCACCACGCCCACCACGGGCCTTTGGTTCTGCTTTAAGAGTCTATGTTGGCAACTTGCCATGGGATGTTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCAATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGGGCAATCAGAGTGAATGTTGCAGAGGAAAGACCTAGACGCAGCTCCTTTTGA 900 0.5122 MSLTTMPAFKSITMAESCLLSLPSLFYAKNKSPSLSIPSKPLNLQLPCSYSSLLPLTTGTTRHSPLLTFVAQTSDWAQEEETPWENQADSTWGTEEGGDDGEEEVAAGGFAEPVEEVKIFVGNLPFDVDSEKLASLFEQAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVQMFSGYELNGRVLTVNKAAPRGMQPERPPRPPRAFGSALRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAEERPRRSSF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1453 299 SUPERFAMILY RNA-binding domain, RBD 210 297 IPR035979 GO:0003676
Ssu6g1453 299 SUPERFAMILY RNA-binding domain, RBD 114 211 IPR035979 GO:0003676
Ssu6g1453 299 MobiDBLite consensus disorder prediction 79 104 - -
Ssu6g1453 299 SMART rrm1_1 215 288 IPR000504 GO:0003723
Ssu6g1453 299 SMART rrm1_1 118 191 IPR000504 GO:0003723
Ssu6g1453 299 CDD RRM_HP0827_like 118 195 - -
Ssu6g1453 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Ssu6g1453 299 PANTHER OS02G0815200 PROTEIN 104 299 - -
Ssu6g1453 299 PANTHER OS02G0815200 PROTEIN 1 83 - -
Ssu6g1453 299 MobiDBLite consensus disorder prediction 79 93 - -
Ssu6g1453 299 CDD RRM_HP0827_like 215 291 - -
Ssu6g1453 299 Gene3D - 71 198 IPR012677 -
Ssu6g1453 299 Gene3D - 199 298 IPR012677 -
Ssu6g1453 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Ssu6g1453 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Ssu6g1453 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Ssu6g1453 299 PANTHER RIBONUCLEOPROTEIN 104 299 - -
Ssu6g1453 299 PANTHER RIBONUCLEOPROTEIN 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1453 Ssu-Chr6 23838765 23841214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1453 115 296 Eukaryotic Initiation Factors Gene Family AT3G16380 33.508 1.49e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1453 - - gmx:100811487 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2306 1 65008732 65011150 Ssu6g1453 6 23838765 23841214 ECH
Ssu6g1453 6 23838765 23841214 Ssu6g1453 6 23838765 23841214 ECH
Ssu6g1453 6 23838765 23841214 Ssu1g2306 1 65008732 65011150 PCT