Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1450 ATGATctctttcatattctttgttttCCTGACACTCTTGTTCACCTTGTCATTGATTAAACATTTGAGGAAGCCTGCTGTAGAAAAGAGACTGCCTCCTGGGCCATGGAAACTACCTTTCATTGGCAACCTCCACCAGCTTGGAATGTTTACCCATGGATCCCTTCAACGTCTTTCACGTCAGCACGGACCCCTCATGTTCTTGCAGTTGGGTTCAATACCCACCTTGGTTGTCTCGTCTGCCGAGATGGCCggagagattttcaaaaactatgACTCCGTTTTCTCTGGCAGGCCTTTATTACACGCTCCAAACCGTCTAGGATACGGTTCAACCGTGAGTTTTGCACCGTACGGTGAATACTGGAGGGAAATGAGGAAAATCATGATCTTGGAGCTGCTGAGTGCGAGGAGGGTTCAATCGTTTCAAGCTGTGAGATTTGAGGAGGTCAAACTTCTGCTTCAGTCCATAGCTCTTTCTCCTGGTCCTGTTAATTTGAGTGAATTGACGCTTTTGCTGACTAACAACGTTGTTTGCCGGATTGCTCTCGGCAAAAGGGACAGCGGAGGGGCAGATTATGCAAATAAGCTTTTTGAAATGCTTAGAGAAACACAGGAAATGTTGGGAGGGTTCTTTCTAGTTGACTTCTTTCCACGGTTGGGGTGGCTCAACAAGTTCAATGGCCTTGAAAATAGGCTAGAGAAAAATTTCAGAGAACTGGATAACTTTTATGACCAAGTGATTAAGGAGCATATTAATGACTCTGAGAGGGCAGGAGCAGAGCATGAAGATGTTGTCGATGTACTTCTTCAAGTTCAGAAGGATCCAAATCAAGCAATTGCCATCGGTGATGACCAAATCAAGGGTGTACTCGCGGACATTTTTGTAGCAGGAACTGACACTGCTTCGGCCACAATGATATGGACAATGTCTGAGCTGATTAGGAACCCAAAGGCAATGAAAAGAGCACGagaagaggtaagagaagctgTTAAGGGAAAAGAGATGGTAGAAGAGATTGACCTTTCGAAGCTCTTGTACCTCAAGTCAGTTGTGAAGGAGGCACTGAGACTCCATCCACCGGCGCCATTGCTTGTGCCAAGAGAGACTACAGAGAGTTGCACGATCAAAGGGTTTGAAATCCCGGCCAAAACGAGGGTGCTTGTCAATGCAAAATCAATAGCAATGGATCCAACTTGTTGGGAGAATCCGAATGAGTTCTTACCAGAGAGATTCTTGGATAATAGTCCAATCGATTATAGAGGACAACAGTTTGAGATGTTGCCATTTGGGGCAGGCCGGAGGGGTTGCCCCGGAGTGAACTTTGCCATGCCGCTTGTTGAGTTAGCACTTGCAAATCTTTTGTTTCGTTTTGACTGGAAACTCCCTCTTGGACTTGGAATAGAAGACTTGAATATGGAAGAAGCAATTGGCATTACCATGCACAAGAAAGCTCATCTCTGGCTCAAAGCCACTCCCGTCAACGAGTAG 1491 0.442 MISFIFFVFLTLLFTLSLIKHLRKPAVEKRLPPGPWKLPFIGNLHQLGMFTHGSLQRLSRQHGPLMFLQLGSIPTLVVSSAEMAGEIFKNYDSVFSGRPLLHAPNRLGYGSTVSFAPYGEYWREMRKIMILELLSARRVQSFQAVRFEEVKLLLQSIALSPGPVNLSELTLLLTNNVVCRIALGKRDSGGADYANKLFEMLRETQEMLGGFFLVDFFPRLGWLNKFNGLENRLEKNFRELDNFYDQVIKEHINDSERAGAEHEDVVDVLLQVQKDPNQAIAIGDDQIKGVLADIFVAGTDTASATMIWTMSELIRNPKAMKRAREEVREAVKGKEMVEEIDLSKLLYLKSVVKEALRLHPPAPLLVPRETTESCTIKGFEIPAKTRVLVNAKSIAMDPTCWENPNEFLPERFLDNSPIDYRGQQFEMLPFGAGRRGCPGVNFAMPLVELALANLLFRFDWKLPLGLGIEDLNMEEAIGITMHKKAHLWLKATPVNE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1450 496 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PANTHER OS08G0105600 PROTEIN 1 495 - -
Ssu6g1450 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Ssu6g1450 496 Gene3D Cytochrome P450 23 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 SUPERFAMILY Cytochrome P450 32 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 173 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 Pfam Cytochrome P450 32 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g1450 496 PANTHER CYTOCHROME P450 71A9 1 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1450 Ssu-Chr6 23735214 23736986 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1450 1 489 Cytochrome P450 AT5G25120 42.485 2.16e-140 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1450 K20617 - gmx:100806157 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1450 6 23735214 23736986 Ssu6g1450 6 23735214 23736986 ECH
Ssu1g2294 1 64797926 64800140 Ssu6g1450 6 23735214 23736986 PCT