Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1449 ATGGAGATGGAACGCGTCTTCGAATTTCCTCACACTCACATGGATCGGCGCCCGAGAAAGAGAGCGAGGTTGGGCTGGGACATCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTATGCTCCTTCAAGTGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGGCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGACAGAGAACGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATCGAGGTGTTGCAACAGCTTGGAAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGagtTCCTCTAGATCACCAAGTTCCTATTTCAAGAGGGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTTGAGTTATGCACGGGTGAAGCCTTGTTTCAGACTCATGAAAATTTAGAGCATGTTGCAATGATGGAAAGGGTACTTGGTCCATTACCACAACACATGTTGAAGAGAGTTGACCGTCACGCCGAGAAGTATGTTAGGAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCTTCTGAAAGACTTACAGCCAAGGAAGCTCTTAGGCATTCCTTCTTCATGAGAGATCACTTTAGGAGATGA 1293 0.4331 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSYAPSSGPSEHTTSSLFVKAVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHVAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFMRDHFRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1449 430 PANTHER KINASE AFC1 1 430 - -
Ssu6g1449 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Ssu6g1449 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1449 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1449 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Ssu6g1449 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1449 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Ssu6g1449 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Ssu6g1449 430 CDD PKc_CLK 85 423 - -
Ssu6g1449 430 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1449 Ssu-Chr6 23719318 23723080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1449 103 423 Core Cell Cycle Gene Families AT1G76540 25.373 3.57e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Ssu6g1449 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1449 K08287 - gmx:100804452 865.914