Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1437 ATGTCCACAGCAGATAACCCAACACATTCCCATTTCCCAGTTTCCCATTTACCATTTCCCAAACCCTTCCCCTCTCCCTTCTCTCTACTCACACACTCACTCACTCTCATTCCCCAAACCCACCCAAAACCTCACTCTTTACCACCAAAACTGAATGGCAATTTCCTCAGCAGCAGCGGCAGCAACCTCAAAGCTCGCATACCCTCATGCCTACCCCTCTCCCTCGCCCTCCTCCAATTGCCTCTTCCTCAAAGCCCACACACCCTCCACAGCCCACCTTTCCTCTTCCTTCCTACACCCCTCCACAATCCTCCACCTCGCCCCCACCCCGCCGCTGCCGCTGCCGCTGCCATCCGCCGCCGCCGCTCCTTCGCCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAGAAATACGACGAAATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAGCCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCGCAGACGAAAGAGCACATTCTCTTGGCCAAGCAAGTGGGTGTCCCCAACATGGTGGTGTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTGCAGTTGGTAGAATTGGAGGTGCGTGAGCTTCTTTCCTCGTACGAGTTCCCTGGCGATGATGTTCCCATTATTTCTGGTTCCGCGTTGTTGGCTCTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGTGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTTATGGATGCTGTGGACAGCTACATTCCTATCCCTCAGCGCCAAACGGAGCTTCCCTTTTTGCTGGCCATCGAGGACGTGTTTTCGATCACGGGTCGTGGAACCGTGGCCACCGGCCGTGTTGAGAGGGGTACTATTAAGGTTGGAGACACGGTTGATATTGTTGGTGTGAGGGAAACTAGGAACACCACCGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCCATGGCCGGGGACAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGACGGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACCCCTCACACCAAGTTTGCTGCGATTGTCTATGTCTTGAAGAAGGAAGAAGGTGGCAGGCACTCTCCCTTCTTTGCCGGTTACAGGCCTCAGTTCTACATGAGGACTACTGATGTTACTGGCAAAGTGACTGCCATTATGAATGACAAGGACGAGGAGTCCAAGATGGTCATGCCGGGTGACCGTGTCAAAATGGTGGTTGAACTTATTGTCCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTCAGTAA 1611 0.5599 MSTADNPTHSHFPVSHLPFPKPFPSPFSLLTHSLTLIPQTHPKPHSLPPKLNGNFLSSSGSNLKARIPSCLPLSLALLQLPLPQSPHTLHSPPFLFLPTPLHNPPPRPHPAAAAAAAIRRRRSFAVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENQWVDKIYELMDAVDSYIPIPQRQTELPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFAAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1437 536 CDD EFTU_II 348 434 IPR033720 -
Ssu6g1437 536 Pfam Elongation factor Tu C-terminal domain 435 534 IPR004160 -
Ssu6g1437 536 Pfam Elongation factor Tu GTP binding domain 137 338 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 435 535 IPR009001 -
Ssu6g1437 536 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 137 341 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 CDD EFTU_III 437 531 - -
Ssu6g1437 536 PANTHER ELONGATION FACTOR TU 109 535 - -
Ssu6g1437 536 PRINTS GTP-binding elongation factor signature 258 267 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 PRINTS GTP-binding elongation factor signature 185 193 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 PRINTS GTP-binding elongation factor signature 205 215 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 PRINTS GTP-binding elongation factor signature 221 232 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 PRINTS GTP-binding elongation factor signature 141 154 IPR000795 GO:0003924|GO:0005525
Ssu6g1437 536 Pfam Elongation factor Tu domain 2 362 430 IPR004161 GO:0005525
Ssu6g1437 536 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 178 193 IPR031157 -
Ssu6g1437 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 363 IPR027417 -
Ssu6g1437 536 Gene3D Translation factors 343 471 - -
Ssu6g1437 536 TIGRFAM small_GTP: small GTP-binding protein domain 140 272 IPR005225 GO:0005525
Ssu6g1437 536 TIGRFAM EF-Tu: translation elongation factor Tu 129 536 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu6g1437 536 Gene3D - 129 340 IPR027417 -
Ssu6g1437 536 CDD EF_Tu 138 340 IPR041709 -
Ssu6g1437 536 PANTHER ELONGATION FACTOR TU-RELATED 109 535 - -
Ssu6g1437 536 Hamap Elongation factor Tu [tuf]. 128 536 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu6g1437 536 SUPERFAMILY Translation proteins 342 438 IPR009000 -
Ssu6g1437 536 Gene3D Translation factors 475 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1437 Ssu-Chr6 23500458 23502068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1437 135 534 Eukaryotic Initiation Factors Gene Family AT5G60390 29.888 1.76e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1437 K02358 - rcu:8278277 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1437 6 23500458 23502068 Ssu6g1437 6 23500458 23502068 ECH
Ssu6g1437 6 23500458 23502068 Ssu1g2286 1 64592958 64594397 PCT