Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1427 ATGGGAGCCAAACCCGTAGACAATAATAACGACAACAATAATACTGTTAAGTTCCTTTATAGCTACGGCGGCAAGATCCTTCCCCGCCACACCGACGGCAAGCTCCGATACTATGGCGGCCACACCAGAGTCCTCGCTCTCCATCCTTCCACTTCTTTCGCAGAGTTGATGGTAAAGCTTACCGAGTTGTGTGGTTCGCCGGTCACTCTTCGGTGTCCATTGCCGAACGGAGACTTGGACACCTTGATTTCCGTCACCAGCGACGAAGATTTGGCTAATATAATCGAGGAATACGATCGAGCTTCTTCTTCGTTACCGAATCCGTTGAAGATCAGAGCCATTCTTTCGCTGCCAAAGAAATTGTTGTCTCCTTCTCCGTCTTCTTCGTCCAGCGCCGCTCACTCTCCGTCCGGTTCGCCTCACTCCTCCGCCGGTTCCCTGCGGTGCTCGGCGGCGCATCGGTCAGTCTGCCGGAGTTGCTCGCCGGTGCCGGTTGCGTGTCCGATTGGCTTCCGTAACGGAGCCGCGAAAGGCTGCTGGTACACGAGGCAATTGGACGGAAGCCCAAGATTCCTTTACCGTGGGCCTCATTGGAATAATTATTGCCACTGA 612 0.5408 MGAKPVDNNNDNNNTVKFLYSYGGKILPRHTDGKLRYYGGHTRVLALHPSTSFAELMVKLTELCGSPVTLRCPLPNGDLDTLISVTSDEDLANIIEEYDRASSSLPNPLKIRAILSLPKKLLSPSPSSSSSAAHSPSGSPHSSAGSLRCSAAHRSVCRSCSPVPVACPIGFRNGAAKGCWYTRQLDGSPRFLYRGPHWNNYCH 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1427 203 PANTHER OS05G0427100 PROTEIN-RELATED 12 203 - -
Ssu6g1427 203 PANTHER PB1 DOMAIN PROTEIN 12 203 - -
Ssu6g1427 203 Gene3D - 35 114 - -
Ssu6g1427 203 SUPERFAMILY CAD & PB1 domains 32 120 - -
Ssu6g1427 203 SMART PB1_new 30 116 IPR000270 GO:0005515
Ssu6g1427 203 Pfam PB1 domain 32 103 IPR000270 GO:0005515
Ssu6g1427 203 CDD PB1_UP2 21 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1427 Ssu-Chr6 23424069 23424774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1427 1 100 MAP Kinase Kinase Kinase AT3G46920 43.000 1.24e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1427 - - gsj:114393520 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1427 6 23424069 23424774 Ssu6g1427 6 23424069 23424774 ECH
Ssu6g1427 6 23424069 23424774 Ssu1g2274 1 64422850 64423548 PCT