Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1425 ATGCGAGGGAGACTAGGGGACTTCGGTTTGGCGAAGCTTTACACGCACGGGGAGGTTCCCAACACCACGCGTGTGGTGGGGACGCTGGGGTACTTGGCGCCGGAGTTGGCCACGGTGGCGGCGCCGACTTCGGCGAGTGACGTGTACAGCTTTGGGGTCGTGCTGTTGGAGGTGGCGTGCGGGAGGCGGCCGATAGAGACGTcggtggcggaggaggaggtggtgCTCATTGATTGGGTGAGGGAGTTGTACGCGAAAGGGTGCGCGCGTGAGGCCGCGGATGCCAGGATTAGAGGGGAGTACGATGAGGGGGACATGGAGATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGACCCCCAGAGGAGACCCACCATGAAGGAAGTCGTTGCGCTTCTCCTCGGACAGGACCCGCCGGAGGCGCCCGGAAAAGTCTTGTCCGATTTGGTTCGCGGCGGCCAGGAATTGGATGAGGCCGAGCCTTTGCAACCCTCCACTCGGGTTTGA 510 0.5961 MRGRLGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATVAAPTSASDVYSFGVVLLEVACGRRPIETSVAEEEVVLIDWVRELYAKGCAREAADARIRGEYDEGDMEMVLKLGLACCHPDPQRRPTMKEVVALLLGQDPPEAPGKVLSDLVRGGQELDEAEPLQPSTRV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1425 169 Gene3D Transferase(Phosphotransferase) domain 1 1 142 - -
Ssu6g1425 169 Pfam Protein kinase domain 4 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1425 169 ProSiteProfiles Protein kinase domain profile. 1 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1425 169 PANTHER - 1 155 - -
Ssu6g1425 169 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 1 155 - -
Ssu6g1425 169 SUPERFAMILY Protein kinase-like (PK-like) 4 136 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1425 Ssu-Chr6 23391538 23392047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1425 1 136 Receptor kinase-like Gene Family AT1G15530 69.343 1.86e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu6g1425 Pkinase 2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1425 - - gmx:100816035 322.398