Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g1423 | ATGGAAGATGTGAATCGCACCCCAAGAGAAGCAAAGGATTACTATTCTAGATCAACATGGTTGTCAGAAACTGCACAGGCATTTGGGGATCTCAAGAGAAGTGACAGAAATGGAGTTAATGGCACCTATTTTACTGCTGGCAGAGATTCGTACGGCTATAGCTTCCAAGAAATGGCGACTCCCGAAATTTCTGAAACATTTGAAGAAATCAAAGGTTTAACTAGTACCAAAAACGAAGTTAATGACATCCCTGAGGCTGTTGGCGAAGAAAACGGTGACTTTGGACACTATTCTAGACAAATGTTGTCAACAGAAATTGTTGAGATAGTTGAGGATGGCATGAGCATAACAAGCAACAAAGATAGAAGAGTTGATGATCTTTATGTGGCTGTTGGCAAAGATGACTTGGATGTAGTAAAATGGGCTCTTGATCATGCTGTTTCTCCCGGTGCCCGGATTTTTCTTATCCATGTCTCTTCTCCAATCACATTGATTCCTACGCCAGTTGGAAAGTTCGAAAGAAGCCAACTGGCCCCGCACCAAGTGAGACTGTACGTGAATGAAGTGAACAACAAGAGGAAGGATCTTCTGCAGAAGTACATTCAGATGAGTATTGAAGCCAAGGTAGCTGCAGAAACGTTGCTTCTGGAAAGCAATGACACAGGAAAAGCAATTCTGGATCTCATCTCTATTCTTAACATAACCAGCCTTGTCATCGGAATCAAAAAGCTACCCTACACACGGCGCAATAACAAATTGAGCAAAGGAGAGTTTGTAAAGAAACATGCACCGATTTCCTGTGAAGTTACCTTAGTTTATAATGGCGAGCGTGCTGACTTGCTGAATATCATGTTACAACTTTCAACTTTCGATCATGAGGAAGTAAATGGGCTCGCGAACCATAGACTGATAGACCTAAAAGCAAGTGGTCCAAAAAGTGTCACTCTCTGCCTCAATCCTTTGTTGGAGCTCGATGTCATACTCTCACTGATGAGCCCTGTCAGAGAGGAAGTGGAAGGCCTCGCCGATGAGCTTGAAGGCCTCCTTGGACGCCATATGGGTGTTCTTGTcaaaccaccatcaccactgcacTGGAGAGACCGTGTCCTTTACGAACCATGTCACCACACACTTGTGGATGGGGGAGAACCGTCACAAACTGAAGGTAATCAGTCATGGACGAAAAGTGAAGGGTTGCAAATTGGAGAACGAGCATGCGATGACGATAATGTAGACAATTGGGTTTACATCCCTTCTAAATGTATGCTACCACATGGTGGGAAACGAGCGTACTACGACGTGTCAATAAGCAAAAGAACCGAGTCTCCTTCCGTCACTGTCAAATCGCAAATAGTTAATAAGGTGGGCGCGGGTGTTCCCAACCTCCTCATATTGTTTTCATTGCTCCAACCCAATTCCTCACGATTCATCGCGCTCCCAGATTGGGCTTTTTCCGAAACCCTAGCGTCTCACGAGATGAACCCCTACGACAATCGATTATCCGACGCCGCTTCTTTTCGCGGCCGTCGCAGTGATTTCGTTGGATCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCTCGATTCCCTACGGTGCTCCGCACGGCGTCCCTGGACCAAACGGGTTCAGATCCGCACCCGTTGCTCCGATTCCACCATTTGTGCCCCCTCCTGGGGGCTTTAGCGTAGGACGAGGAGGTGCTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAACATGACCTAGGTCGTGGTGGCGGGGGAAGaggtcgtggtggtggtggtggtggtagagcCGGAACTCACGGTTTTAGGGGCTCCGGGAGAGGAGGTAGACATGGTGGTGGATCTTCTAGAGACGATTTGAACAACGTTGCACTTCCGAAGCAAGATTTTAAGAATTTGGTcccttttgagaagaacttctACGTTGAGTGCCATGCGGTGAGGGCCATGTCTGATCAAGAAGTTGTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGCAGGATGTGCCGAAACCTGTACGGATGTTTCATGAGGCGAATTTTCCTGATCACTGCCTTGAGGTCATTGCCAAACTGGGTTTTGCTGAACCCACTCCAATTCAGGCTCAGGGATGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCCGAGACCGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAGCCTCGATTGGCACAAGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGCTAGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTTGGGCAAATATTAGAAGTACGTGCATCTATGGTGGGGCACCAAAGGGCCCCCAAATTCGTGAGCTTAAAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACTAACCTGCGGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGGTTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAAGTTGAGACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGGTCGCCATACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGATTGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGTGCTAAAGGAACTGCATACACGTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGGTCAGCTGGTTCTGGtcaatttgGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGGGTCTATAG | 3309 | 0.4545 | MEDVNRTPREAKDYYSRSTWLSETAQAFGDLKRSDRNGVNGTYFTAGRDSYGYSFQEMATPEISETFEEIKGLTSTKNEVNDIPEAVGEENGDFGHYSRQMLSTEIVEIVEDGMSITSNKDRRVDDLYVAVGKDDLDVVKWALDHAVSPGARIFLIHVSSPITLIPTPVGKFERSQLAPHQVRLYVNEVNNKRKDLLQKYIQMSIEAKVAAETLLLESNDTGKAILDLISILNITSLVIGIKKLPYTRRNNKLSKGEFVKKHAPISCEVTLVYNGERADLLNIMLQLSTFDHEEVNGLANHRLIDLKASGPKSVTLCLNPLLELDVILSLMSPVREEVEGLADELEGLLGRHMGVLVKPPSPLHWRDRVLYEPCHHTLVDGGEPSQTEGNQSWTKSEGLQIGERACDDDNVDNWVYIPSKCMLPHGGKRAYYDVSISKRTESPSVTVKSQIVNKVGAGVPNLLILFSLLQPNSSRFIALPDWAFSETLASHEMNPYDNRLSDAASFRGRRSDFVGSIPPPSFVGRGGSIPYGAPHGVPGPNGFRSAPVAPIPPFVPPPGGFSVGRGGARVGNGHVSDRKHDLGRGGGGRGRGGGGGGRAGTHGFRGSGRGGRHGGGSSRDDLNNVALPKQDFKNLVPFEKNFYVECHAVRAMSDQEVVHYRASREITVQGQDVPKPVRMFHEANFPDHCLEVIAKLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAQGDGPIVLVLAPTRELAVQIQEEALKFGSWANIRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQVRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVVTDMEKYNRLIRLLKEVIDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQGL | 1102 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g1423 | 1102 | CDD | DEADc_DDX5_DDX17 | 690 | 884 | - | - | |
Ssu6g1423 | 1102 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 830 | 838 | IPR000629 | - | |
Ssu6g1423 | 1102 | MobiDBLite | consensus disorder prediction | 572 | 586 | - | - | |
Ssu6g1423 | 1102 | Pfam | Helicase conserved C-terminal domain | 908 | 1018 | IPR001650 | - | |
Ssu6g1423 | 1102 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 555 | 1087 | - | - | |
Ssu6g1423 | 1102 | Gene3D | - | 641 | 888 | IPR027417 | - | |
Ssu6g1423 | 1102 | Gene3D | HUPs | 129 | 272 | IPR014729 | - | |
Ssu6g1423 | 1102 | PANTHER | LD32873P | 555 | 1087 | - | - | |
Ssu6g1423 | 1102 | SMART | ultradead3 | 697 | 900 | IPR014001 | - | |
Ssu6g1423 | 1102 | SMART | helicmild6 | 937 | 1018 | IPR001650 | - | |
Ssu6g1423 | 1102 | CDD | STK_N | 128 | 275 | - | - | |
Ssu6g1423 | 1102 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 709 | 884 | IPR014001 | - | |
Ssu6g1423 | 1102 | Pfam | DEAD/DEAH box helicase | 702 | 873 | IPR011545 | GO:0003676|GO:0005524 | |
Ssu6g1423 | 1102 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 750 | 1038 | IPR027417 | - | |
Ssu6g1423 | 1102 | MobiDBLite | consensus disorder prediction | 1062 | 1102 | - | - | |
Ssu6g1423 | 1102 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 135 | 266 | - | - | |
Ssu6g1423 | 1102 | MobiDBLite | consensus disorder prediction | 563 | 624 | - | - | |
Ssu6g1423 | 1102 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 678 | 706 | IPR014014 | GO:0003724 | |
Ssu6g1423 | 1102 | Gene3D | - | 889 | 1060 | IPR027417 | - | |
Ssu6g1423 | 1102 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 912 | 1057 | IPR001650 | - | |
Ssu6g1423 | 1102 | CDD | SF2_C_DEAD | 897 | 1027 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g1423 | Ssu-Chr6 | 23367434 | 23384635 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g1423 | 665 | 1038 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 35.733 | 1.56e-69 | 237 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g1423 | K12823 | - | gmx:100777610 | 998.038 |