Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1423 ATGGAAGATGTGAATCGCACCCCAAGAGAAGCAAAGGATTACTATTCTAGATCAACATGGTTGTCAGAAACTGCACAGGCATTTGGGGATCTCAAGAGAAGTGACAGAAATGGAGTTAATGGCACCTATTTTACTGCTGGCAGAGATTCGTACGGCTATAGCTTCCAAGAAATGGCGACTCCCGAAATTTCTGAAACATTTGAAGAAATCAAAGGTTTAACTAGTACCAAAAACGAAGTTAATGACATCCCTGAGGCTGTTGGCGAAGAAAACGGTGACTTTGGACACTATTCTAGACAAATGTTGTCAACAGAAATTGTTGAGATAGTTGAGGATGGCATGAGCATAACAAGCAACAAAGATAGAAGAGTTGATGATCTTTATGTGGCTGTTGGCAAAGATGACTTGGATGTAGTAAAATGGGCTCTTGATCATGCTGTTTCTCCCGGTGCCCGGATTTTTCTTATCCATGTCTCTTCTCCAATCACATTGATTCCTACGCCAGTTGGAAAGTTCGAAAGAAGCCAACTGGCCCCGCACCAAGTGAGACTGTACGTGAATGAAGTGAACAACAAGAGGAAGGATCTTCTGCAGAAGTACATTCAGATGAGTATTGAAGCCAAGGTAGCTGCAGAAACGTTGCTTCTGGAAAGCAATGACACAGGAAAAGCAATTCTGGATCTCATCTCTATTCTTAACATAACCAGCCTTGTCATCGGAATCAAAAAGCTACCCTACACACGGCGCAATAACAAATTGAGCAAAGGAGAGTTTGTAAAGAAACATGCACCGATTTCCTGTGAAGTTACCTTAGTTTATAATGGCGAGCGTGCTGACTTGCTGAATATCATGTTACAACTTTCAACTTTCGATCATGAGGAAGTAAATGGGCTCGCGAACCATAGACTGATAGACCTAAAAGCAAGTGGTCCAAAAAGTGTCACTCTCTGCCTCAATCCTTTGTTGGAGCTCGATGTCATACTCTCACTGATGAGCCCTGTCAGAGAGGAAGTGGAAGGCCTCGCCGATGAGCTTGAAGGCCTCCTTGGACGCCATATGGGTGTTCTTGTcaaaccaccatcaccactgcacTGGAGAGACCGTGTCCTTTACGAACCATGTCACCACACACTTGTGGATGGGGGAGAACCGTCACAAACTGAAGGTAATCAGTCATGGACGAAAAGTGAAGGGTTGCAAATTGGAGAACGAGCATGCGATGACGATAATGTAGACAATTGGGTTTACATCCCTTCTAAATGTATGCTACCACATGGTGGGAAACGAGCGTACTACGACGTGTCAATAAGCAAAAGAACCGAGTCTCCTTCCGTCACTGTCAAATCGCAAATAGTTAATAAGGTGGGCGCGGGTGTTCCCAACCTCCTCATATTGTTTTCATTGCTCCAACCCAATTCCTCACGATTCATCGCGCTCCCAGATTGGGCTTTTTCCGAAACCCTAGCGTCTCACGAGATGAACCCCTACGACAATCGATTATCCGACGCCGCTTCTTTTCGCGGCCGTCGCAGTGATTTCGTTGGATCTATTCCGCCGCCGTCTTTCGTCGGCCGCGGCGGCTCGATTCCCTACGGTGCTCCGCACGGCGTCCCTGGACCAAACGGGTTCAGATCCGCACCCGTTGCTCCGATTCCACCATTTGTGCCCCCTCCTGGGGGCTTTAGCGTAGGACGAGGAGGTGCTAGAGTGGGCAATGGTCACGTGAGTGATAGAAAACATGACCTAGGTCGTGGTGGCGGGGGAAGaggtcgtggtggtggtggtggtggtagagcCGGAACTCACGGTTTTAGGGGCTCCGGGAGAGGAGGTAGACATGGTGGTGGATCTTCTAGAGACGATTTGAACAACGTTGCACTTCCGAAGCAAGATTTTAAGAATTTGGTcccttttgagaagaacttctACGTTGAGTGCCATGCGGTGAGGGCCATGTCTGATCAAGAAGTTGTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGGCAGGATGTGCCGAAACCTGTACGGATGTTTCATGAGGCGAATTTTCCTGATCACTGCCTTGAGGTCATTGCCAAACTGGGTTTTGCTGAACCCACTCCAATTCAGGCTCAGGGATGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCCGAGACCGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAGCCTCGATTGGCACAAGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGCTAGCTGTTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCTTGGGCAAATATTAGAAGTACGTGCATCTATGGTGGGGCACCAAAGGGCCCCCAAATTCGTGAGCTTAAAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACTAACCTGCGGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGGTTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAAGTTGAGACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTATTGGGTCGCCATACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGATTGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGTGCTAAAGGAACTGCATACACGTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGGTCAGCTGGTTCTGGtcaatttgGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGGGTCTATAG 3309 0.4545 MEDVNRTPREAKDYYSRSTWLSETAQAFGDLKRSDRNGVNGTYFTAGRDSYGYSFQEMATPEISETFEEIKGLTSTKNEVNDIPEAVGEENGDFGHYSRQMLSTEIVEIVEDGMSITSNKDRRVDDLYVAVGKDDLDVVKWALDHAVSPGARIFLIHVSSPITLIPTPVGKFERSQLAPHQVRLYVNEVNNKRKDLLQKYIQMSIEAKVAAETLLLESNDTGKAILDLISILNITSLVIGIKKLPYTRRNNKLSKGEFVKKHAPISCEVTLVYNGERADLLNIMLQLSTFDHEEVNGLANHRLIDLKASGPKSVTLCLNPLLELDVILSLMSPVREEVEGLADELEGLLGRHMGVLVKPPSPLHWRDRVLYEPCHHTLVDGGEPSQTEGNQSWTKSEGLQIGERACDDDNVDNWVYIPSKCMLPHGGKRAYYDVSISKRTESPSVTVKSQIVNKVGAGVPNLLILFSLLQPNSSRFIALPDWAFSETLASHEMNPYDNRLSDAASFRGRRSDFVGSIPPPSFVGRGGSIPYGAPHGVPGPNGFRSAPVAPIPPFVPPPGGFSVGRGGARVGNGHVSDRKHDLGRGGGGRGRGGGGGGRAGTHGFRGSGRGGRHGGGSSRDDLNNVALPKQDFKNLVPFEKNFYVECHAVRAMSDQEVVHYRASREITVQGQDVPKPVRMFHEANFPDHCLEVIAKLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAQGDGPIVLVLAPTRELAVQIQEEALKFGSWANIRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQVRPDRQTLLWSATWPREVETLARQFLRNPYKVIIGSPYLKANQSINQVVEVVTDMEKYNRLIRLLKEVIDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQGL 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1423 1102 CDD DEADc_DDX5_DDX17 690 884 - -
Ssu6g1423 1102 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 830 838 IPR000629 -
Ssu6g1423 1102 MobiDBLite consensus disorder prediction 572 586 - -
Ssu6g1423 1102 Pfam Helicase conserved C-terminal domain 908 1018 IPR001650 -
Ssu6g1423 1102 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 555 1087 - -
Ssu6g1423 1102 Gene3D - 641 888 IPR027417 -
Ssu6g1423 1102 Gene3D HUPs 129 272 IPR014729 -
Ssu6g1423 1102 PANTHER LD32873P 555 1087 - -
Ssu6g1423 1102 SMART ultradead3 697 900 IPR014001 -
Ssu6g1423 1102 SMART helicmild6 937 1018 IPR001650 -
Ssu6g1423 1102 CDD STK_N 128 275 - -
Ssu6g1423 1102 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 709 884 IPR014001 -
Ssu6g1423 1102 Pfam DEAD/DEAH box helicase 702 873 IPR011545 GO:0003676|GO:0005524
Ssu6g1423 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 1038 IPR027417 -
Ssu6g1423 1102 MobiDBLite consensus disorder prediction 1062 1102 - -
Ssu6g1423 1102 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 135 266 - -
Ssu6g1423 1102 MobiDBLite consensus disorder prediction 563 624 - -
Ssu6g1423 1102 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 678 706 IPR014014 GO:0003724
Ssu6g1423 1102 Gene3D - 889 1060 IPR027417 -
Ssu6g1423 1102 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 912 1057 IPR001650 -
Ssu6g1423 1102 CDD SF2_C_DEAD 897 1027 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1423 Ssu-Chr6 23367434 23384635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1423 665 1038 Eukaryotic Initiation Factors Gene Family AT3G19760 35.733 1.56e-69 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1423 K12823 - gmx:100777610 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1423 6 23367434 23384635 Ssu6g1423 6 23367434 23384635 ECH