Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1422 ATGACGACTCGGTTCAAGAAGAACAGGAAGAAGAGGGGTCACGTGAGCGCGGGTCACGGCCGCATCGGGAAGCACCGGAAGCACCCCGGAGGTCGCGGTAACGCCGGTGGCATGCACCACCACCGCATCCTCTTCGACAAGTACCACCCCGGTTACTTCGGCAAGGTCGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTATTGCCCCATCGTCAACATCGACAAGCTCTGGTCCCTCCTTCCCCAAGAGGCCAAGGACAAGGCCTCCCCCGACAAGGCACCCTTGCTCGACGTCACCCAGTTTGGATACTTTAAGGTTTTGGGAAAAGGGGTTTTGCCTCAGAACCAGCCCCTCGTCGTTAAGGCCAAGCTCGTTTCCAAGATCGCCGAGAAGAAGATCAAGGAGGCCGGTGGAGCCGTTCTTCTCACCGCTTGA 441 0.5805 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEAKDKASPDKAPLLDVTQFGYFKVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVLLTA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1422 146 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g1422 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Ssu6g1422 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 142 IPR021131 -
Ssu6g1422 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Ssu6g1422 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Ssu6g1422 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
Ssu6g1422 146 Gene3D - 58 146 - -
Ssu6g1422 146 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1422 Ssu-Chr6 23364256 23364696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1422 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 84.932 4.23e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1422 K02900 - gmx:100527293 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1422 6 23364256 23364696 Ssu6g1422 6 23364256 23364696 ECH
Ssu6g1422 6 23364256 23364696 Ssu1g2273 1 64388849 64389292 PCT