Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1420 ATGATGGGTAACCCTAGCCCTAACCCTAACCCGGAAGAGGAAAAGAACCTCCAGGAGGAGCTGCTGGGCCCCATCTTGCTGGGAGAGCGCGTGATAAAACTGGCTCAGGAGGCGGAGTCGTCGAAGGTGGACTGCACGGAGCTGGCGAGGAAGGTGCAGGTGGTGTGCGACAACCTGCGGTCCGTGGTGCGCGTGGTGTCGGGGAGCCAGTGCTTGAACGAGCGCCCCATCCGGCGCATCGTCGGCGAGGTCTCCAAAAACCTAGAGCGCACGTTAGCGCTCGTGCGCAAGTGCAAGAAGCACGGCGGGGTCCTCCGCCAGGTGTTCTCCATGACCACCACCGCGGACTTCCGGAAGGTCCGGAACCTTCTGGAATCTTCGAACGGCGACCTGGTGTGGCTCCTCAGCATCTTCGACTCCAAGGGCACGAACCTCTCCCTTCCCCCCATCGCCAGCAACGACCCCATCCTCGCTTGGGTCTGGACCTACACCTACACCCTCCAATTGGGCCAGCCCAAGGACCGGGCCGACGCCGCCACGGAGCTCGGCTCCCTCGCCACAGACAACGACCGCAACAAGTTCATCATCTTGGAGGAAGGTGGTGTGACGCCCCTCCTCAAGCTTCTTAAGGAAGCTTCTTCCCCTGATGCTCAGGTCGCAGCTGCCAATGCTCTCGTCAACATTACAACCAATCAAGACAGAGTCGTGGGTTTCATCGTGGAGTCCCATGCTGTCCCCACCATTGTTCAGGTCCTTGGTGACTCCCCCATGAGGGTGCGTGTCTCTGTTACCAATTTGGTCTCGGCCATGGCGGACCAAAATGTACTTGCTCGCGAGGAGTTCGTGAGAGCCAATGTGACTAGGCCCCTTGTGTCATTGTTGTCCATGGATATGGATACTGTCCTCGCCGACCCCACGGCCGGTCGCGCCAGCATTCATTCGCTTGTTCTCAATTTGTCCAACGTCGGCGAGGCCAATTCCGACGGGAGTAGCCGCGGGAGCAGCCACCAGAGAAAGGAGAAGGACAGAGAGGTTGAGAGCCCGGAGTTGAGGAATGATGTTAAAGTCAGTTGTGCTAAGGCTCTTTGGAAACTCTCCAAAGGGTGTCTTTCAACTAGCAGGAAGATTACTGAGACTAAAGGTTTGCTTTGTCTTGCTAAGATTATTGAGGCCGAGAGTGGGGAGTTGCAGCTCAATTGTCTTATGGCTGTCATGGAGATTGCTGCGGTGGCGGAGTCTAATGCTGATCTTAGAAGAGCTGCTTTTAAGCGAACTGCGCCGGCGGCGAGAGCTGTTTTGGATCAGCTTTTGAGGGTGGTTCAGGAAGAGAGCAGTCCGGCATTGCGGATTCCTGCCATTAAGGCAATTGGTTCCTTGGCCAGAAACTTCTCTGGAAAGGTTCCGGAAGTTCTTGGTCCTTTGGTTGCTCAGCTTGGTAACAGAGATGTTGATGTAGCCAGTGAGGCTGCCATTGCTTTGGGGAAGTTTGTGTGCCTGGACAACTACAACTGTGTGGACCATTCTAAGGCAATACTTGAACTTGATGGGATTCCTAAGCTAATGAGGTTGCTGCAGATAAATCATCGGCAACAAGTGCATGGCCTGAAATTACTTTGTTACCTTGCCTTAAATGTAGGTAACAGTAAGATCCTTGAGCAAGAACACGCCTTGAGTACCCTTGAGAGGCTTGCTCGTCCTGTTCAAGCCCAACATCCTGATTTGAAGGACCTTTTTGCAAAGGCCATACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 1806 0.546 MMGNPSPNPNPEEEKNLQEELLGPILLGERVIKLAQEAESSKVDCTELARKVQVVCDNLRSVVRVVSGSQCLNERPIRRIVGEVSKNLERTLALVRKCKKHGGVLRQVFSMTTTADFRKVRNLLESSNGDLVWLLSIFDSKGTNLSLPPIASNDPILAWVWTYTYTLQLGQPKDRADAATELGSLATDNDRNKFIILEEGGVTPLLKLLKEASSPDAQVAAANALVNITTNQDRVVGFIVESHAVPTIVQVLGDSPMRVRVSVTNLVSAMADQNVLAREEFVRANVTRPLVSLLSMDMDTVLADPTAGRASIHSLVLNLSNVGEANSDGSSRGSSHQRKEKDREVESPELRNDVKVSCAKALWKLSKGCLSTSRKITETKGLLCLAKIIEAESGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAARAVLDQLLRVVQEESSPALRIPAIKAIGSLARNFSGKVPEVLGPLVAQLGNRDVDVASEAAIALGKFVCLDNYNCVDHSKAILELDGIPKLMRLLQINHRQQVHGLKLLCYLALNVGNSKILEQEHALSTLERLARPVQAQHPDLKDLFAKAIHHLTLYQPGAQLHRQPLGL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1420 601 MobiDBLite consensus disorder prediction 333 350 - -
Ssu6g1420 601 Gene3D - 334 596 IPR011989 -
Ssu6g1420 601 Gene3D - 163 331 IPR011989 -
Ssu6g1420 601 Gene3D - 20 137 IPR036537 GO:0007166
Ssu6g1420 601 PANTHER ARMADILLO REPEAT ONLY 4 12 599 - -
Ssu6g1420 601 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 233 IPR000225 GO:0005515
Ssu6g1420 601 MobiDBLite consensus disorder prediction 325 350 - -
Ssu6g1420 601 Pfam Armadillo/beta-catenin-like repeat 189 229 IPR000225 GO:0005515
Ssu6g1420 601 SMART arm_5 504 543 IPR000225 GO:0005515
Ssu6g1420 601 SMART arm_5 231 272 IPR000225 GO:0005515
Ssu6g1420 601 SMART arm_5 188 230 IPR000225 GO:0005515
Ssu6g1420 601 SUPERFAMILY ARM repeat 171 586 IPR016024 -
Ssu6g1420 601 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 12 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1420 Ssu-Chr6 23340657 23342462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1420 141 260 U-box Gene Family AT3G46510 33.607 3.94e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1420 - - gmx:100813824 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1420 6 23340657 23342462 Ssu6g1420 6 23340657 23342462 ECH