Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1419 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCCAAACTAGCTGGACTGCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTAAGGCCTGATTTAAAGAGAGGAATGTTCTCACAGCAGGAGGAGGATCTTATAATCAGTCTTCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTCAAGCAAGGGATTGACCCAACTACACACAAGCCCCTTGTAAAGGAAGATAAGAAAATCACGGAGACATCACCTATGCAAACACCATTGTCTCAAGGGCCTTCAGTTCCATTAACCTTTCCTTCATCACAGGGATCAGCACTTCTAATAAGCGATTCCAATTACTATGATGGAGGGCTAACAGAAGCTTCGAGAGAAATTTTCATGAGCAAGCCAGCATTGGACCCTTTATCATCCTACTATGATTTTCCAATGGGTGTTGCACAGTCTGGTTTTAACTTACCTATGAGTCAGTATCACACAGGCCTTAAAGCACCTGATCAGAGTCCTTTTGGACCCAATTCAAGCTATGGGTTCTCTTCAATGTCAAGTCTAACCAATTCTGATCATGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGCTCATTGTTCATGAACGATCAGGTGAAAGAAAGTTCCAGTAATAGCTCAAACATGAGCACCATTTACCCTGGAGGAGGGTGTCATATGAGCAGCGTCATGGAAAATGCAGGGTTCTCGTGGGACGGCGACAACAAATTTGACCCTTTGTTTCAGTTCCAAGTAAATGGCATAAAATCCGAGGATTTTAAGACAAGTTCATGGGAAGAAGGGCAGCTGCACACTCACAATTCAATAGATTTCACTAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACGGGAGGAAATTTTGATGTATTCCAGCATATATGA 1104 0.4176 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLVKEDKKITETSPMQTPLSQGPSVPLTFPSSQGSALLISDSNYYDGGLTEASREIFMSKPALDPLSSYYDFPMGVAQSGFNLPMSQYHTGLKAPDQSPFGPNSSYGFSSMSSLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYPGGGCHMSSVMENAGFSWDGDNKFDPLFQFQVNGIKSEDFKTSSWEEGQLHTHNSIDFTSFPLTSLSEDLTGGNFDVFQHI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1419 367 Gene3D - 11 67 - -
Ssu6g1419 367 CDD SANT 70 109 IPR001005 -
Ssu6g1419 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu6g1419 367 CDD SANT 17 61 IPR001005 -
Ssu6g1419 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu6g1419 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu6g1419 367 SMART sant 66 114 IPR001005 -
Ssu6g1419 367 SMART sant 13 63 IPR001005 -
Ssu6g1419 367 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu6g1419 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu6g1419 367 Gene3D - 69 140 - -
Ssu6g1419 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu6g1419 367 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu6g1419 367 PANTHER MYB TRANSCRIPTION FACTOR 1 363 - -
Ssu6g1419 367 PANTHER MYB DOMAIN PROTEIN 55 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1419 Ssu-Chr6 23333004 23334339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1419 1 134 MYB Transcription Factor Family AT1G57560 79.851 2.76e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1419 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1419 K09422 - gmx:100811140 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1419 6 23333004 23334339 Ssu6g1419 6 23333004 23334339 ECH
Ssu6g1419 6 23333004 23334339 Ssu1g2269 1 64341415 64342707 PCT