Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1416 ATGGCATCATCCAGCTCCTACAATTCTCCCTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTCCCACCCGAAGAGCCTCAAAAATTCGCCAACGTCCACAAAATATTTGGTGCTAGCAATGTGACCAAACTCCTCAACGAGCTCCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTGGCCTATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACACTGATCTGCTACGCTATTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCTGGACTTACTTCATTTCAACAAATGCCCCAAAGGCAGTTTAGTGCAAGATTTGGTAACGAAGGAAGTGGGTTTTATCGGCAATCTACTACTACTGCTTATTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTgagggaggaggaggaggaggtaaTTTGTGA 561 0.4635 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSYTDIPPASLSVPPGLTSFQQMPQRQFSARFGNEGSGFYRQSTTTAYSFPYALPWTDTSSEDISEGGGGGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1416 186 Coils Coil 89 109 - -
Ssu6g1416 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
Ssu6g1416 186 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Ssu6g1416 186 PANTHER ELONGATED PETIOLULE 1 1 183 - -
Ssu6g1416 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1416 Ssu-Chr6 23222415 23222975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1416 1 186 AS2 family AT5G63090 62.694 9.89e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g1416 LOB 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1416 - - gmx:100803667 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1416 6 23222415 23222975 Ssu6g1416 6 23222415 23222975 ECH
Ssu6g1416 6 23222415 23222975 Ssu1g2266 1 64198060 64198446 PCT