Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1406 ATGCCTGTAAATCCATGgaccctcttcttcttcttatgcATTTTCCTTCTACTTCCATTCCACTCTTTCATAGCTGCCGCAGTGAACCAACAAGGGGAAGCTCTTCTGTCATGGAAGAGAACCCTGAACGGCTCCCTAGAGGTATTGAGTAACTGGGACCCAATTCAAGACACCCCATGTAGCTGGTATGGATTGAGTTGCAACTCGAAGAACGAAGTAGTACAATTGGATCTGAGGTATGTGGACTTGCTTGGAAGACTTCCCACTAATTTCACCTCACTGCTTTCCTTAAGCAGTCTCATCTTAACCGGTACCAACCTCACGGGTTCAATTCCAAAAGAAATAGGGGTCCTCAGCGAACTCAGTTACTTGGACTTGAGTGACAATGCCCTGAGTGGCGAAATCCCAAGTGTGCTATGTTACTTGCCCAAACTCGAGGAACTCCATCTCAACTCGAACGACCTCGTGGGGTCCATTCCAGTTGCAATTGGGAACCTCACAAAGTTGGAGAAGCTGATCCTATACGACAACCAACTCGGCGGCGAAGTTCCCAGCACCATCGGCAACCTTAAGAGCCTTCAGGTGATAAGAGCAGGAGGAAACAAGAACCTGGAAGGCCCTTTACCACAAGAAATCGGCAACTGTTCCAATTTGGTGATGTTGGGTCTGGCGGAAACAAGCCTCTCAGGTTCCCTGCCACCAACTCTTGGCCTCTTGAAAAACCTTCAAACCATTGCCATTTACACTTCCTTACTCTCCGGTGAAGTGCCACCCGAACTCGGCGACTGCACTGCGCTCCAAAACATTTATCTTTACGAGAACTCCCTCACTGGGTCCATACCAAGCCATTTGGGAAACCTTAAGAACCTCGAAAACCTTCTGCTGTGGCAGAACAACTTAGTTGGCACCATCCCACCAGAGATTGGAAACTGCGAGCAGTTGTCAGTGATCGACGCGTCGATGAACTCACTAACAGGAAGCGTCCCCAAAACTTTTGGAAACTTGACATCACTGGAAGAGCTCCAACTCAGCGTGAACCAGATTTCGGGGGAGATTCCTGGAGAACTGGGCAAGTGTCAGCAACTCACGCACGTGGAGCTCGACAACAATCTCATCACGGGCACAATACCTTCCGAATTGGGAAACCTAGGGAATCTAACGTTGTTGTTCCTGTGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCCCTTTCCAACTGTCACAACCTAGAGGCTATTGATCTGTCGCAGAATGGATTAACGGGTCCCATACCCGAAGGGATATTCCAGCTCAAGAATCTCAACAAGCTCTTGCTTCTCTCAAACAATCTCTCAGGGAAAATCCCCTCTCAGATTGGGAATTGTTCCTCCCTTATTCGATTCCGAGCCAACGACAACAACATCACCGGGAACATCCCCTCGCAGATTGGGAATCTCAACAATTTGAATTTCCTCGACCTCGGGAACAATCGGATTTCCGGCGTTATCCCGGAGGAGATCTCCGGCTGCCGGAATCTCGCTTTTCTCGACATACATTCCAACTTCATCGCCGGAAATTTGCCGGAAAGTTTGAGCCGGCTTAATTCGCTTCAGTTTCTCGATGTCTCTGATAACATGATCGAAGGTACACTAAACCCTACCCTCGGTTCTCTGGCCGCACTCTCCAAGCTCGTTCTCGCGAAGAATCGAATCGCCGGCTCAATTCCGAGTCAACTCGGTTCTTGCGCGAAATTGCAGTTGCTGGACCTCAGCTGCAACCGCCTCTCGGGCGAAATCCCCGGCAGCATTGGCAACATTCCGGCGCTGGAAATCACTCTGAATCTGAGCCTCAACCAGCTCTCCGGCGAGATCCCTCGGGAGTTTTCCGCTTTGACGAAGCTCGGAGTGCTGGACATCTCTCACAACGTTCTCAGCGGAAACCTGCAATATCTCGCGGTCCTGCAAAATCTCGTGGCGCTCAATATCTCGTATAACAGATTCTCCGGGCGCGTTCCCGACACGCCCTTCTTCGCGAAGCTTCCGCTCAGCGTGCTCGCCGGGAACCCGGCGCTGTGCTTCCCCGGCAACGGCTGCGCCAGCGACGGCGCAGGGAAGTCCGGACGGCGGGCGAGGGTGGCGCGCGTGGCGATGGTGGTTATGCTTTGCACCGCGTGCCTGCTGCTCATGGCGGCGCTGTACGTCGTCGTCGCAGCGAAACGACGAGGGTACCGCGAAAACGACGTGGAGGTGGATCGAAAGGACAGCGACGCGGACATGGCCCCACCTTGGGAGGTGACACTGTACCAGAAACTCGACCTGTCTATCTCTGACGTAGCGAAATGTCTCTCCGCCGGCAACGTCGTCGGCCACGGCCGATCCGGCGTCGTTTACAGGGTCAACTTGCCCGCCACGGGACTCGCCATCGCGGTCAAGAAGTTCCGCCTGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCCACGCTGGCGCGAATCCGCCACCGGAACATCGTGCGGCTCCTGGGTTGGGGAGCGAACCGGAGAACGAAGTTACTGTTTTACGATTATTTACCGAACGGTAATTTGGACACGTTGTTGCACGAGGGGTGCACCGGATTAATTGACTGGGAGACGCGGCTCAGAATAGCGCTCGGCGTGGCTGAGGGTGTGGCTTACTTGCACCACGATTGCGTGCCTGCTATCTTGCACCGGGACGTCAAGGCGCTCAACATTTTGTTAGGAGACAGATATGAACCCTGTTTGGCTGATTTCGGATTCGCTCGATTCGTCGAAGAAGATCACGCTTCCTTTTCCGTTAATCCGCAGTTCGCGGGCTCCTACGGCTACATTGCTCCCGAGTATGCTTGCATGCTTAAAATCACAGAGAAGAGCGATGTGTACAGCTTTGGCGTGGTCCTACTAGAGATAATAACGGGGAAAAAGGCCAGTGGATCCATCATTCCCGGATGGACAACATGTTATTCAGTGGGTCAGGGAGCACCTAAAGAGCAAGAAGGACCCAATTGA 3012 0.5252 MPVNPWTLFFFLCIFLLLPFHSFIAAAVNQQGEALLSWKRTLNGSLEVLSNWDPIQDTPCSWYGLSCNSKNEVVQLDLRYVDLLGRLPTNFTSLLSLSSLILTGTNLTGSIPKEIGVLSELSYLDLSDNALSGEIPSVLCYLPKLEELHLNSNDLVGSIPVAIGNLTKLEKLILYDNQLGGEVPSTIGNLKSLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSLSGSLPPTLGLLKNLQTIAIYTSLLSGEVPPELGDCTALQNIYLYENSLTGSIPSHLGNLKNLENLLLWQNNLVGTIPPEIGNCEQLSVIDASMNSLTGSVPKTFGNLTSLEELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCHNLEAIDLSQNGLTGPIPEGIFQLKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGVIPEEISGCRNLAFLDIHSNFIAGNLPESLSRLNSLQFLDVSDNMIEGTLNPTLGSLAALSKLVLAKNRIAGSIPSQLGSCAKLQLLDLSCNRLSGEIPGSIGNIPALEITLNLSLNQLSGEIPREFSALTKLGVLDISHNVLSGNLQYLAVLQNLVALNISYNRFSGRVPDTPFFAKLPLSVLAGNPALCFPGNGCASDGAGKSGRRARVARVAMVVMLCTACLLLMAALYVVVAAKRRGYRENDVEVDRKDSDADMAPPWEVTLYQKLDLSISDVAKCLSAGNVVGHGRSGVVYRVNLPATGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLRIALGVAEGVAYLHHDCVPAILHRDVKALNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKKASGSIIPGWTTCYSVGQGAPKEQEGPN 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1406 1003 ProSiteProfiles Protein kinase domain profile. 775 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1406 1003 SUPERFAMILY RNI-like 76 397 - -
Ssu6g1406 1003 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Ssu6g1406 1003 ProSitePatterns Protein kinases ATP-binding region signature. 781 805 IPR017441 GO:0005524
Ssu6g1406 1003 Pfam Protein kinase domain 779 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1406 1003 Gene3D Ribonuclease Inhibitor 140 220 IPR032675 -
Ssu6g1406 1003 SUPERFAMILY Protein kinase-like (PK-like) 764 978 IPR011009 -
Ssu6g1406 1003 Pfam Leucine Rich repeat 335 351 IPR001611 GO:0005515
Ssu6g1406 1003 Gene3D Ribonuclease Inhibitor 329 426 IPR032675 -
Ssu6g1406 1003 Gene3D Ribonuclease Inhibitor 221 328 IPR032675 -
Ssu6g1406 1003 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Ssu6g1406 1003 Pfam Leucine rich repeat 464 514 IPR001611 GO:0005515
Ssu6g1406 1003 Gene3D Transferase(Phosphotransferase) domain 1 766 994 - -
Ssu6g1406 1003 SUPERFAMILY RNI-like 304 658 - -
Ssu6g1406 1003 SMART LRR_sd22_2 624 646 - -
Ssu6g1406 1003 SMART LRR_sd22_2 527 542 - -
Ssu6g1406 1003 SMART LRR_sd22_2 166 192 - -
Ssu6g1406 1003 SMART LRR_sd22_2 118 144 - -
Ssu6g1406 1003 SMART LRR_sd22_2 479 502 - -
Ssu6g1406 1003 SMART LRR_sd22_2 383 409 - -
Ssu6g1406 1003 PANTHER OS01G0170300 PROTEIN 3 977 - -
Ssu6g1406 1003 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Ssu6g1406 1003 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 977 - -
Ssu6g1406 1003 Gene3D Ribonuclease Inhibitor 427 695 IPR032675 -
Ssu6g1406 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Ssu6g1406 1003 SMART serkin_6 775 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1406 1003 SMART LRR_typ_2 551 575 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 383 407 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 287 311 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 479 503 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 408 431 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 166 190 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 118 142 IPR003591 -
Ssu6g1406 1003 SMART LRR_typ_2 335 359 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1406 Ssu-Chr6 23013077 23016742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1406 27 998 Receptor kinase-like Gene Family AT5G56040 54.444 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g1406 Pkinase 6.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1406 - - gmx:100778064 1666.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1406 6 23013077 23016742 Ssu6g1406 6 23013077 23016742 ECH