Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1402 ATGCTGCTATTGTTGCTGGGTTTTTATCTTGAGTCAGATACCGGCAAACTCAACGCGTCGTCGTATTACACCGTGGTTGTGGATTGTGGAAGCACTGGGACACGGGTGAATGTGTACGAGTGGATGGTAGGGGTAGGGGGCATAAACAAAGGGAACTTGCCAGTGTTGCTGCACTCTTATCCTGATAATGCGACCAGGAGTAGTTCACTATGGAAAAGTTCTTGCCAATACCACTGTATGCAAACCGAACCCGGTTTACACAACTTTGTTAATGATTCTTTAGGAGTGAGACAAGCTCTGGAGCCTTTGATTGTGTGGGCAGAACGACTGGTGCCGCGCAAAATGCACGGTGACACTCCTGTTTTTGTCTTGGCTACTGCTGGACTCAGGAGGCTCCCCGGGGAGGATGCCAACCGGGTCTTGGGAGACGTCGAGGCGGTCGTGAAGGATCACTCCCTTATGTTTAGCAAGAGCTGGATAAGGGTTTTGAGTGGGAGGGAGGAAGCTTATTATGGTTGGGTGGCTTTGAACTACAGAATGGGCacctttgataataactatcctgGGTCTCCCACTTTGGGACTTGTTGATTTGGGTGGCTCGTCGTTGCAGATTGTGGTAGAGGTAGATGGTGCTGGGGATGATGTGCACGTGACGAGATCAAAGCTCAGCTCAGTGGAACATTGGATTATGGCATACTCATTGCCTGCGTTTGGCTTAAATGAAGCATTTGATAGGACAGTTCTTATGCTCAGAAACAATCAAAGCGAGGAAAGAACTGCAAGTATCTCTGAGCTCAGACATCCTTGTCTGGTATCAACTTTTGTACAAAACTATACGTGCCATTCTTGCTCTGGATTGGCTTCCATTTATCAGAAAAATCACAGCCAACACCAGGAAAGTGAACTTTATTCTCTACGTCTTACTGGACAACCTGATTGGGAGCAATGCAAAGAACTAGCTATTGCTGCTGCTATGAACTTGAGCGATTCCATAGTTTCACATCTGACAGTTAGCAAAAATTGCCATGCTAGCTCATTTTCTGGCACTGGTATACTTAATTTATCTGCTGTTGCACACCCAATCAAGTTTCATGCTTTATCTGGCTTCTTTTTTGTCTACAACAAGCTAAATTTGAGCCCAAGAACCAACTTAACAATGGTTTGGGAATCAGGCAAGCAAATATGTTCAAATTTATGGTTCAGCTTGAGCAGTATTTCTGACGATCCAAATTATGCTGGACAATTTTGTTTCCGGGTGGCTTATATGGCATCATTGATTGAATATGGTCTGTGTCTTGGTGACGTTGAAATGGTATTTGGTCCAGGTGACATTTCGTGGACCTTAGGAGCTGCAATGATTGAAGGGAAATTTCTGTGGTTAAATAGTACAAGCCGCAAAGCCCACGTTATTATTTCaactttaaaaaatgtcaaggTCGTGTCTTCTccaacttttctttttgctGTACTTCTATTGCttttattgattgtttattGTAGTCAAATTAAGCTACCAATGCCAAGCAGGAGGGCTTCTGCTTCTAGCTCATCTTTGCCATCTTATACTCATggGAGGGAGATGGGGAAAGGAGTGTGGTGCCTCATGGAGAATTGA 1617 0.4292 MLLLLLGFYLESDTGKLNASSYYTVVVDCGSTGTRVNVYEWMVGVGGINKGNLPVLLHSYPDNATRSSSLWKSSCQYHCMQTEPGLHNFVNDSLGVRQALEPLIVWAERLVPRKMHGDTPVFVLATAGLRRLPGEDANRVLGDVEAVVKDHSLMFSKSWIRVLSGREEAYYGWVALNYRMGTFDNNYPGSPTLGLVDLGGSSLQIVVEVDGAGDDVHVTRSKLSSVEHWIMAYSLPAFGLNEAFDRTVLMLRNNQSEERTASISELRHPCLVSTFVQNYTCHSCSGLASIYQKNHSQHQESELYSLRLTGQPDWEQCKELAIAAAMNLSDSIVSHLTVSKNCHASSFSGTGILNLSAVAHPIKFHALSGFFFVYNKLNLSPRTNLTMVWESGKQICSNLWFSLSSISDDPNYAGQFCFRVAYMASLIEYGLCLGDVEMVFGPGDISWTLGAAMIEGKFLWLNSTSRKAHVIISTLKNVKVVSSPTFLFAVLLLLLLIVYCSQIKLPMPSRRASASSSSLPSYTHGREMGKGVWCLMEN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1402 538 Pfam GDA1/CD39 (nucleoside phosphatase) family 18 454 IPR000407 GO:0016787
Ssu6g1402 538 Gene3D Exopolyphosphatase. Domain 2 164 439 - -
Ssu6g1402 538 PANTHER GDA1/CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN 2 527 - -
Ssu6g1402 538 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 2 527 IPR000407 GO:0016787
Ssu6g1402 538 Gene3D - 11 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1402 Ssu-Chr6 22974925 22978204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1402 1 459 Nodulin-like Gene Family AT4G19180 34.958 1.95e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1402 - - vun:114175521 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1402 6 22974925 22978204 Ssu6g1402 6 22974925 22978204 ECH
Ssu6g1402 6 22974925 22978204 Ssu2g2880 2 90029361 90029942 PCT