Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1391 ATGGCCATAATGGACACGGTGTCGTTTCAGGTCAAAGACCGAGGCTGGGGAGCGCAGACACTGCTCGGCTCTGGGCCTCCGACGTACGCACTGGGCCAATGCCACCGCGACCTCGGGCCCACGGAGTGCTACACCTGTTTCACCCTAGCAAGGCAAGTGCTGTCGCGGTGCGTGCCCAAGACAGCTGGCAGAATCTACCTCGACGGTTGCTTCCTTCGCTACGACAACTACTCTTTCTTTCGCGAGAGCGTGGACCCCACTCGCGACATCAACGTTTGCCAGTCGCAGAGTCTGGGAAAAGACGGGGACAAACGGGTGGCGTCGGCGGTGTTGAACGTGACGGAGGGCGCGGCGGAAAGCGGGTTCGCGGTGGACGGGGGTGAGGGGGTTTTTGCCTTGGCGCAGTGCTGGGCGACGCTGGATAAAGGGAACTGCGAGAGGTGCTTGAGTGAAGCAGGGAAAAAAGTGCAGGAATGTGTGCCTGCTGCTGAGGGTTGGAGTCTCTTTACTGGTTGTTTTTTGAGGTATTCGACGCGCAAATTCTACAACGAAGTTTCAGTAAATGGCATCAAGGATTCTGGACATTCTAGAGAAAGGTCTAGTGTCTGGATGATCGTTGCATGTGTATTAGCAGCGGTTGTAGTGCTTTTACTCGTCGTGCTTGCTGTATTTCTGTGCTGGAAAAGAATAGCATCGCAGAGAAAAGTAAGCGACAGTTGGGGTGCGTCACCTGGTTTTGCCTACGTAGCTGGCTTCAATTTTAGGTACGATTTGCTTGAGAAGGctacaaattattttgataccGCAAACAAATTAGCCCAGGATGGAGCTGGTTCCGTGTTCAAAGGAACCCTCCCCTCAGGAAGGACCGTTGCTGTTAAACGACTGTTTTTTAATTCACGGCAATGGACAGATGGGTTCTTCAATGAGGTCAACTTGATTAATGGGATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGTCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAGTCTTGATCAAGTCCTTTTCGGTAAGGACTCAGAAAATGCTCTTAACTGGGAGCAACGGTTTCAAATCATATGTGGGATAGCTGAGGGTTTAGCATACCTTCATGAAGGCTCTGGAACAAAGATTATTCACAGAGACATAAAGTCCAGCAACATTCTATTTGATGAGAATCTTAATCCAAAAATAGCTGATTTTGGTCTTGCCCGTTGGGTTGCTGAAAATAAATCTCATCTTAGCACAGGAAATGCAGGGGCGCTGGGATATATGACTCCCGAGTATGTTATCAAAGGACAATTGGCAGAGAAGGCAGATATCTATGCTTTTGGTGTGTTAGTTGTTGAAATTGTCTGTGGTCAGAAGAACAGTGATTACATACCGGGGTCAACTTCAGTACTCCACAGTGTCTGGAAGAATTACAAGGCAAATAATATCACAGCATCCATTGATCCCGCTCTGCATGGCAAATTTTCGGTAGAAGAGGCATCAAATGCGCTCCAAGCTGGCCTTCTTTGTACACAATCTTCTGTTACTCTTAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTACTTTATTCCCTCCCCAAAGCAACAACCTTTCCTCAATTTCAGCGGGCTAAGTCTAAATGACCGCTCCGCAACTTCCACAATGAGCATTCTATCCTCAAATGGGCATGCAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCCCTAATCCCAATTGATGATCTAACTGTACTAGAGAATTCACTTTCTTCTTCTGCCAGGTTCACCACTACGGGGAGCCCTGATTCAAATATCCAAATAAATATTGGGGCACCTGAGCCTAGGTAG 1884 0.4777 MAIMDTVSFQVKDRGWGAQTLLGSGPPTYALGQCHRDLGPTECYTCFTLARQVLSRCVPKTAGRIYLDGCFLRYDNYSFFRESVDPTRDINVCQSQSLGKDGDKRVASAVLNVTEGAAESGFAVDGGEGVFALAQCWATLDKGNCERCLSEAGKKVQECVPAAEGWSLFTGCFLRYSTRKFYNEVSVNGIKDSGHSRERSSVWMIVACVLAAVVVLLLVVLAVFLCWKRIASQRKVSDSWGASPGFAYVAGFNFRYDLLEKATNYFDTANKLAQDGAGSVFKGTLPSGRTVAVKRLFFNSRQWTDGFFNEVNLINGIQHKNVVKLLGCSIEGPESLLVYEFVPNGSLDQVLFGKDSENALNWEQRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILFDENLNPKIADFGLARWVAENKSHLSTGNAGALGYMTPEYVIKGQLAEKADIYAFGVLVVEIVCGQKNSDYIPGSTSVLHSVWKNYKANNITASIDPALHGKFSVEEASNALQAGLLCTQSSVTLRPSMSEVVQMLTKKDYFIPSPKQQPFLNFSGLSLNDRSATSTMSILSSNGHASARSSFHSTTSSLIPIDDLTVLENSLSSSARFTTTGSPDSNIQINIGAPEPR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1391 627 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 622 - -
Ssu6g1391 627 Gene3D Transferase(Phosphotransferase) domain 1 342 542 - -
Ssu6g1391 627 Gene3D Phosphorylase Kinase; domain 1 235 341 - -
Ssu6g1391 627 SMART serkin_6 266 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1391 627 Pfam Salt stress response/antifungal 23 77 IPR002902 -
Ssu6g1391 627 Pfam Salt stress response/antifungal 122 178 IPR002902 -
Ssu6g1391 627 ProSiteProfiles Gnk2-homologous domain profile. 1 79 IPR002902 -
Ssu6g1391 627 ProSiteProfiles Gnk2-homologous domain profile. 84 181 IPR002902 -
Ssu6g1391 627 MobiDBLite consensus disorder prediction 607 627 - -
Ssu6g1391 627 CDD STKc_IRAK 272 536 - -
Ssu6g1391 627 Gene3D - 5 79 IPR038408 -
Ssu6g1391 627 Gene3D - 98 181 IPR038408 -
Ssu6g1391 627 ProSiteProfiles Protein kinase domain profile. 266 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1391 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Ssu6g1391 627 Pfam Protein tyrosine and serine/threonine kinase 269 534 IPR001245 GO:0004672|GO:0006468
Ssu6g1391 627 SUPERFAMILY Protein kinase-like (PK-like) 251 538 IPR011009 -
Ssu6g1391 627 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1391 Ssu-Chr6 22840289 22843955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1391 1 561 Receptor kinase-like Gene Family AT1G70520 44.178 2.91e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu6g1391 PK_Tyr_Ser-Thr 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1391 - - gmx:100780384 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1104 5 35271666 35273685 Ssu6g1391 6 22840289 22843955 ECH
Ssu6g1391 6 22840289 22843955 Ssu6g1391 6 22840289 22843955 ECH