Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1385 ATGCAGAGCACAGTTCTCTCCCTCTCGCCTTCCCTCTCTCTCCGCAAACCCCACACCCGTGTCTACGCTTCCACTTCCAAACCCAACGTCATTGttacttcctcttcctcttcctcttcctcttccttcccATGCCAACCGTGTTCTCTTGCTTCTTCTTgttcctctcctctctctttcaAACTCGCTCCCTCTCACCCTTCCCATGCCAGAGCAACCTCCGCGCCGGAGAGCAGCGCCGGCGAGTCCTCCGGCGTCAATACTCTGGAACTGGGGGCCCTGTTTGGGTTCTGGTTCCTCTTCAACATATACTTCAACATTTACAACAAACAGGTCTTGAAGGTCTACCATTTCCCTTTAACTGTAAGCACCCTTCAGTTCGCCGCGGGGACTCTCCTCGTAGCGTTCATGTGgggttttaatctctataaGAGGCCTAAAGTCAGTGGCGCCCAGCTTGCAGCAATATTGCCGCTGGCTCTGGTACATACTTTAGGGAATGTTTTTACTAACATGAGTCTTGGAAAGGTTGCTGTGTCTTTCACTCATACAATAAAAGCAACGGAGCCTTTCTTTTCTGTGCTCCTTTCTGCTATGTTCCTTGGAGAGATGCCTACTGCATGGGTGGTTGGTTCCCTTGTGCCAATTGTTGGTGGGGTGGCGCTGGCCTCTGCTACCGAGGCCTCTTTCAAGTGGGCTGGATTTTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGCTCATGGTTAACAAGGAGGAATCTATGGACAACATAACGCTCTTCTCAATAATAACGGTTATGTCCTTTTTGTTATCAGCACCTGTAACCATTCTCATGGAGGGTGTCAAATTTACCCCTACTTACCTGCAATCTGCTGGATTAAATGTAAACGAAGTGTACATTAGATCTCTTCTTGCTGCACTGTGTTTCCATGCATACCAGCAAGTTTCTTATATGATTCTGCAGAAGGTGTCACCTGTTACCCATTCTGTGGGAAATTGTGTGAAAAGGGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTTCAAACACCAGTATCACCAATTAACGCATTTggtaaaattccttttttctgGTTCCGACTGGAATCAATTGAAGACCAGTgtcttaaagttttttttaaccataTCCCTACTATCTCTTGCTGA 1191 0.4265 MQSTVLSLSPSLSLRKPHTRVYASTSKPNVIVTSSSSSSSSSFPCQPCSLASSCSSPLSFKLAPSHPSHARATSAPESSAGESSGVNTLELGALFGFWFLFNIYFNIYNKQVLKVYHFPLTVSTLQFAAGTLLVAFMWGFNLYKRPKVSGAQLAAILPLALVHTLGNVFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEMPTAWVVGSLVPIVGGVALASATEASFKWAGFWSAMASNLTNQSRNVLSKKLMVNKEESMDNITLFSIITVMSFLLSAPVTILMEGVKFTPTYLQSAGLNVNEVYIRSLLAALCFHAYQQVSYMILQKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINAFGKIPFFWFRLESIEDQCLKVFFNHIPTISC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1385 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 89 368 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu6g1385 396 PANTHER SOLUTE CARRIER FAMILY 35 20 367 - -
Ssu6g1385 396 PANTHER PLASTID PHOSPHATE TRANSLOCATOR 20 367 - -
Ssu6g1385 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 129 224 - -
Ssu6g1385 396 Pfam Triose-phosphate Transporter family 90 368 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1385 Ssu-Chr6 22771553 22780469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1385 1 367 Antiporters AT5G33320 66.494 8.35e-162 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1385 K15283 - gmx:100780925 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2237 1 63522692 63526500 Ssu6g1385 6 22771553 22780469 ECH
Ssu6g1385 6 22771553 22780469 Ssu6g1385 6 22771553 22780469 ECH
Ssu6g1385 6 22771553 22780469 Ssu1g2237 1 63522692 63526500 PCT