Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1384 ATGTTGCCCTCAGTTTCTGTTACTCCTCCCATGGACATTGAAACAAACCTCACAGAAAACTATGCCTCACAGACAATGCATTTGCAAGAAAACTACTTGAAACCCAGCATGGAAGATCAGCTTCCTTTTGGAGCTCCTTCTTCCCAGGGTTTCTTGCAAGATTTTCATCATATTGATAATCATTTTCATGTGAATGGCTCCTCATCCAATCCCATTTTCGGTGTGCAAACTCCAAATTTTGATCCCTTTGATCATAATGTAACCTGTGAGTCTGCTCCTCCTGATTTTGAAGTTTATGAGTGCAAGCCTTTTGTCAGTGGCAATGCTCATCTTATGGACAATTTCCAATACGTAGGTTACAGTATGAACCTCCCTCGGACGAATCAACTGGATATGATGGTCTCAAGCCAAAGTTATATGCCCTTTAATCCTCTTGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCTCCACCAAATTATTATAAGAGAATTGGCTTGAATAAAAACATCAGGGAATCTCCAAGCACCAGGAGAACATTCAAAGCTCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGGCAGCTGATGAAGACAGATTGTTGATTCAACTGGTCGAACAATATGGAGTGAGGAAGTGGTCACATATATCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGGGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATATGGACTGAAGAAGAGGATAAGATACTGATCCAAGCTCATGTAGAGATAGGAAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACTGAGAACTCAATCAAAAACCATTGGAACGCAACCAAGAGAAGGCAATATTCCAAAAGGAAGTGTCGTTCAAAGTACTCTAGAGGATCTCTTCTTCAGGAATATATCAAGAGCTTGAACTTGGACAAAATTCCACCAATAGACTATCGAAAAAAATCTTCTAAAAATGTTAATGCCAAGACAAACAATAATGGGAAAGCAGCAGCTCAGCCCCAGTGTGCAGATCAATTTTGTCCCAGTGGCCACTTGGTGCCAAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGGTGTAGCATTGATTCTTTGCTAGATGATATGCAAAGTGCTTCAACTATGGATGAGAAAGATCTTGGTGGAAAAATGCAATGTGCTCCTACTATGAAGGGAAAACAATCTCATCAGGGAGGCATCATGCATGTTGTTAATGTTGATGATCAGCATCATGAGATTGAGATTATGGCACCCACGATGGGGATTGAAGTTAAGAAGGAACTGGATTTGGTGGAGATGATGTCCCACGTTAATAAAAGCCATTATAGTACACACTCACTACGttga 1425 0.4063 MLPSVSVTPPMDIETNLTENYASQTMHLQENYLKPSMEDQLPFGAPSSQGFLQDFHHIDNHFHVNGSSSNPIFGVQTPNFDPFDHNVTCESAPPDFEVYECKPFVSGNAHLMDNFQYVGYSMNLPRTNQLDMMVSSQSYMPFNPLETKPLNFVVPDEVSCISPPNYYKRIGLNKNIRESPSTRRTFKARKKSNIVKGQWAADEDRLLIQLVEQYGVRKWSHISQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHVEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYSRGSLLQEYIKSLNLDKIPPIDYRKKSSKNVNAKTNNNGKAAAQPQCADQFCPSGHLVPKYDFNEVPDFCLDDNLFEEGCSIDSLLDDMQSASTMDEKDLGGKMQCAPTMKGKQSHQGGIMHVVNVDDQHHEIEIMAPTMGIEVKKELDLVEMMSHVNKSHYSTHSLR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1384 474 PANTHER BNAC07G50190D PROTEIN 105 324 - -
Ssu6g1384 474 Gene3D - 195 248 - -
Ssu6g1384 474 SUPERFAMILY Homeodomain-like 193 289 IPR009057 -
Ssu6g1384 474 SMART sant 195 244 IPR001005 -
Ssu6g1384 474 SMART sant 247 295 IPR001005 -
Ssu6g1384 474 ProSiteProfiles Myb-like domain profile. 191 242 IPR001005 -
Ssu6g1384 474 CDD SANT 199 242 IPR001005 -
Ssu6g1384 474 ProSiteProfiles Myb-like domain profile. 243 293 IPR001005 -
Ssu6g1384 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 297 IPR017930 -
Ssu6g1384 474 Gene3D - 249 314 - -
Ssu6g1384 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 246 IPR017930 -
Ssu6g1384 474 Pfam Myb-like DNA-binding domain 196 242 IPR001005 -
Ssu6g1384 474 Pfam Myb-like DNA-binding domain 251 290 IPR001005 -
Ssu6g1384 474 PANTHER MYB PROTEIN-RELATED 105 324 - -
Ssu6g1384 474 CDD SANT 251 293 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1384 Ssu-Chr6 22767109 22768936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1384 71 395 MYB Transcription Factor Family AT4G18770 48.774 4.13e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1384 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1384 K09422 - gmx:100816653 819.69