Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1382 ATGTTGCCCTCAGTTTCTGTTACTCCTCCCATGGACATTGAAACAAACCTCACAGAAAACTATGCCTCACAGCCAATGCATTTGCAAGAAAACTACTTGAAACCCGGCATGGAAGATCAGCTTCCTTTTGGAGCTTCTTCTTCCCAGGGTTTCTTGCAAGATTTTCATCATATTGATAATCAGTTTCATGTGAATGGCTCCTCATCCAATCCCATTTTCGGTGTGCAAACTCCCAATTTTGATCCCTTTGATCATAATGTAACCTGTGAGTCTGCTCCTCCTGATTTTGAAGTTTATGAGTGCAAGCCTTTTGTCAGTGGCAATGCTCATCTTATGGACAATGTCCAATACGTAGGTTACAGTATGAACCTCCCTCAGCTGAATCAACTGGATATGATGGTCTCAAGCCAAAGTTATATGCCCTTTAATCCTCTTGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCTCCACCAAATTATTATAAGAGAGTTGGCTTGAATAAAAACGTCAGGGAATCTCCAAGCACTAGGAGAACATTCAAAGCTCGGAAGAAGTCCAACACAGTGAAGGGGCAATGGGCAGCTGATGAAGACAGGTGCATAATTTTATGGAATACATACTTTCCATTaaaccttttgtttttaatggcTATTTATATAATCTTgttacatcaattttattttttcacatattgGAATTTTGCATATTTGGGTGAGAAATCACATTTATCTGCTTGGACTGCTTCCATAAACAGATTGTTGATTCAACTGGTCGAACAATATGGAGTGAGGAAGTGGTCACATATATCTCAGGCGTTGCCTGGAAGAATAAGGAAACAATGCAGGGAACAATGGCCCAGACATTAA 885 0.3819 MLPSVSVTPPMDIETNLTENYASQPMHLQENYLKPGMEDQLPFGASSSQGFLQDFHHIDNQFHVNGSSSNPIFGVQTPNFDPFDHNVTCESAPPDFEVYECKPFVSGNAHLMDNVQYVGYSMNLPQLNQLDMMVSSQSYMPFNPLETKPLNFVVPDEVSCISPPNYYKRVGLNKNVRESPSTRRTFKARKKSNTVKGQWAADEDRCIILWNTYFPLNLLFLMAIYIILLHQFYFFTYWNFAYLGEKSHLSAWTASINRLLIQLVEQYGVRKWSHISQALPGRIRKQCREQWPRH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1382 294 Gene3D - 245 294 - -
Ssu6g1382 294 CDD SANT 251 291 IPR001005 -
Ssu6g1382 294 Pfam Myb-like DNA-binding domain 251 291 IPR001005 -
Ssu6g1382 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 294 IPR017930 -
Ssu6g1382 294 ProSiteProfiles Myb-like domain profile. 250 294 IPR001005 -
Ssu6g1382 294 SUPERFAMILY Homeodomain-like 243 292 IPR009057 -
Ssu6g1382 294 PANTHER MYB PROTEIN-RELATED 93 210 - -
Ssu6g1382 294 PANTHER MYB PROTEIN-RELATED 251 294 - -
Ssu6g1382 294 PANTHER BNAC07G50190D PROTEIN 93 210 - -
Ssu6g1382 294 PANTHER BNAC07G50190D PROTEIN 251 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1382 Ssu-Chr6 22756241 22757125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1382 71 294 MYB Transcription Factor Family AT4G18770 32.000 7.70e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g1382 Myb_DNA-binding 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1382 K09422 - gmx:100816653 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2236 1 63507684 63509459 Ssu6g1382 6 22756241 22757125 ECH
Ssu6g1382 6 22756241 22757125 Ssu6g1382 6 22756241 22757125 ECH
Ssu1g2236 1 63507684 63509459 Ssu6g1382 6 22756241 22757125 PCT