Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1380 ATGGAAGAAACATTTGTTCCCTTACGCGGGATCAAGAATGACCTCAAAGGAAGACTCGTGTGCTACAAACAAGATTGGACTAGTGGATTCCAGGCAGGCATCAGATGGAACTCTAACTGCAGTACAGACACTTGCATCAACTGCAGTCTGTGGCATTATCCATTCAATCTTAGGAGGGCAGCCCTCCTCATACTAGGTGTAGCTGAGCCAACAGTTCTGATGTACACATTCCTGTACAACTTTGCAAAGGATAGAAAGGATTTGGGGCACAAACTTTTCCTGCCTTGGACTGGATGGGTGTGTGTTTGGACCGCCCTGTTGCTGTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAACAGATTCACACGCCTTGCAGGCGAACTGTTTGGTCTGCTAATTGCAATGCTATTTATGCAGCAGGCTATAAGGGGACTCGTGGAAGAGTTCGGTGTGCACCAGTCACAGAGAGAAGGTACCAATCAGATTGCACTTCAATCCTCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGCCTTCTGTTTACTGCATTAAGAAGCCGTAAGGCTAGATCCTGGCGTTATGGGACAGGATGGTTGCGGGGATTTGTAGCTGATTATGGAGTCCCACTAATGGTTCTTGGGTGGACTGCTGTGTCTTACATACCAGTCAATAAGGTTCCAAGGGGAATCCCAAGGCGACTTTTCAGTCCAAATCCATGGTCTCCCGGAGCATACTCAAATTGGACTGTAATTAAGGAAATGTGGAATGTGCCTCCTATCTATATTATTGGAGCATTCATACCGGCAACTATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCCCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCATCATATCATTATGACCTCCTCCTCTTGGGCTTCTTGACCATATTGTGTGGACTTATTGGAATCCCTCCGTCCAACGGTGTGATTCCTCAATCTCCAATGCATACTAAAAGCTTAGCTACTCTAAAACATCAGCTCTTGCGTAATAAGCTTGTAGCTGCTGCACGAAAAAGCATGCAGAAAAATATGAACCTGAGTCAGTTATATCAAAGAATGCAAGAGGCATATGATCAAATGCAGACTCCATTAGCCCACCAAATACCACCTGCCTTGGGGCTAAAGGAGATGAAGGAATCCACAATCCAACTGGCTTCAGGTCATGGATACATTGATGCCCCTGTTGATGAGACTGTTTTCGATGTGGATAAGGATATTGATGACCTTTTACCGGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTGCTGCAGGCTTTGATGGTTGGGGCTTGTGTTGCTGCTATGCCTCTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTACTTTGCTTTCATGGCAATTGAAAGCTTGCCTGGAAATCAGCTTTGGGAGAGAATATTATATCTTTTCACTGCTCCAAGTCGAAGGGTGCTGAAGAAACACCATGCGACCTTTGTTGAGACCGTGCCCTTCAAAACGGTCGCCATGTTTACCTTATTCCAGACAGCTTATTTGCTTCTCTGCTTTGGTCTAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTATCCCAGTACGCCAATATTTCCTTCCCAAGTTTTTTAAAGGAGCCCATCTTCAAGAGTTGGATGCTGCTGCATACGAGGAAGCACCTGCTATTAGTTTCAACTTGTCATTCGATGATTCAAGTAGTCAGGCAACAACAGTCAATATTAATAGTGGGGAAATTCTTGACGAAATTATTACAAGGAGTCGTGGAGAGATCTGCCTCAATCAAAAATCAAGGAGTTCAACTCCAACATCATTTGGAGATACTATACCTCCTTATGGAAATATCTCAAAGGATTCACAGCTCTCAAGTAACTCAATTGAGAGGGGAAAGCAGCCTAGGATCAATCCTGAGGGAGATCAAGTTCAAGATAACTAG 2013 0.4426 MEETFVPLRGIKNDLKGRLVCYKQDWTSGFQAGIRWNSNCSTDTCINCSLWHYPFNLRRAALLILGVAEPTVLMYTFLYNFAKDRKDLGHKLFLPWTGWVCVWTALLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIRGLVEEFGVHQSQREGTNQIALQSSWLFGNGMFALVLSFGLLFTALRSRKARSWRYGTGWLRGFVADYGVPLMVLGWTAVSYIPVNKVPRGIPRRLFSPNPWSPGAYSNWTVIKEMWNVPPIYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARKSMQKNMNLSQLYQRMQEAYDQMQTPLAHQIPPALGLKEMKESTIQLASGHGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQALMVGACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQLWERILYLFTAPSRRVLKKHHATFVETVPFKTVAMFTLFQTAYLLLCFGLTWIPIAGVLFPLLIMLLIPVRQYFLPKFFKGAHLQELDAAAYEEAPAISFNLSFDDSSSQATTVNINSGEILDEIITRSRGEICLNQKSRSSTPTSFGDTIPPYGNISKDSQLSSNSIERGKQPRINPEGDQVQDN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1380 670 PANTHER BORON TRANSPORTER 2-RELATED 60 630 - -
Ssu6g1380 670 MobiDBLite consensus disorder prediction 622 656 - -
Ssu6g1380 670 PANTHER ANION EXCHANGE PROTEIN 60 630 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu6g1380 670 MobiDBLite consensus disorder prediction 622 670 - -
Ssu6g1380 670 PANTHER ANION EXCHANGE PROTEIN 1 36 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu6g1380 670 PANTHER BORON TRANSPORTER 2-RELATED 1 36 - -
Ssu6g1380 670 Pfam HCO3- transporter family 434 522 IPR011531 GO:0006820|GO:0016021
Ssu6g1380 670 Pfam HCO3- transporter family 176 347 IPR011531 GO:0006820|GO:0016021
Ssu6g1380 670 Pfam HCO3- transporter family 61 157 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1380 Ssu-Chr6 22718636 22723332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1380 1 666 Antiporters AT3G62270 67.429 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1380 K24194 - gmx:100815420 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1380 6 22718636 22723332 Ssu6g1380 6 22718636 22723332 ECH
Ssu6g1380 6 22718636 22723332 Ssu1g2235 1 63473014 63477590 PCT