Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1375 ATGGGTTTTTCCTCTCTCCACGTCTGCATGGACTCATCAGATCACTGGCTGCAGGGCACAATTCACGAGGAGTGCGGGATGGATTCTTCTTCACCATCTGGCGACATGCTTCCATGCTCGAGGCCAATGACAGAGAGGAGGCTAAGACCCCCGCAAGAGCAAGCCCTCAAGTGCCCCAGGTGTGAATCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCCCAGCCCAGGTACTTCTGCAAAACATGTAGAAGGTACTGGACCAAAGGCGGCACTCTTAGGAACATCCCTGTTGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAACCCAATGAATCCCCACCAGCTATTAATCAAAACCAACCACACCCTGTACCCTCTTATCTTCATAATCACAAAGATCTTCAGCTTTCCTTCCTAGATGCGCAATTTTCCCACCTCAACAATTTACTTGGGACTAATGCTGGGGCACTGGGAAACCCTAATTTCATGGAGAGTAACTACAACATGGGCATGCTCGAGAACCCTAGGCCTATTGACTTCATGGAAAGCAGGCTGGATGGTATGAATATGATTAGGAGTTCCACTAGGAGTTTTGATCTTCTTGAAAATGGTGATATGAGTGTGGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGAATGCCATTGAATTATCAAGGTCTTTCCTCTCCAGCATTTGGGGGCATGTCCCTAGATGCAAGCATTAGCAATGTTGGAACTTATATAATGGACTCTTGTCAGCGACTTATGTTGCCCTATGATGGAGGTGATAACACCCATAATGGCTCAATTGATGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCAGGGTTGCTCTGATGCTGAAAAAGTGTCATTGGGATATCTTAATGGTTCAGGATCATGGACCGGTTATGGATCTTCCACAACAAACCCTTTGGTCTAG 984 0.4654 MGFSSLHVCMDSSDHWLQGTIHEECGMDSSSPSGDMLPCSRPMTERRLRPPQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKPNESPPAINQNQPHPVPSYLHNHKDLQLSFLDAQFSHLNNLLGTNAGALGNPNFMESNYNMGMLENPRPIDFMESRLDGMNMIRSSTRSFDLLENGDMSVGGGVGLGDMSGYNGMPLNYQGLSSPAFGGMSLDASISNVGTYIMDSCQRLMLPYDGGDNTHNGSIDVKPNPKLLSLEWQDQGCSDAEKVSLGYLNGSGSWTGYGSSTTNPLV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1375 327 MobiDBLite consensus disorder prediction 103 128 - -
Ssu6g1375 327 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Ssu6g1375 327 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Ssu6g1375 327 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Ssu6g1375 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 318 IPR045174 GO:0003700|GO:0006355
Ssu6g1375 327 PANTHER - 13 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1375 Ssu-Chr6 22645051 22646674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1375 1 298 C2C2-Dof Transcription Factor Family AT5G62940 42.216 7.69e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu6g1375 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1375 - - gmx:100815061 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1375 6 22645051 22646674 Ssu1g2232 1 63396442 63397647 PCT