Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1370 ATGGAAGGTTACGGGCATGAATCTAAGAAGCGGTTCTGGCATGCGGAGGAAGACGCAGTTCTAACTGATTTCGTAAAGAAGCATGGAACGGGGAAATGGAATCGTATTCCTAAAGTGACAgGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTGAGGTGGATGAATTATCTGAATCCTGAAATTAAACGTGGAGATTTCtcagaggaagaagaagacCTTGTTATTCGGCTCCACAACCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGGAGGGTTCCGGGGAGGACAGACAACCAAGTGAAGAACTTTTGGAATACTTATTTAAGGAAGAAGCTTGGCGTTAAGAAGCAAAAGAGCAAAGTTTGTGCCCCTCCAAAATCTATTCCAATGGTTGAACCAAAGAGTAATTGCAATAGCACACTCAAGGGTACTATGAGGAATTCATCAGAGTCTAATGGTGAAGATGAAAAGCTTGTCCAAGCAAGCTTGAGTGGTGATCTAATCGACTTCGCAAGCATGCATGAGGGGATTATGACAGATGATTTTGGCTGTACATTTTCTTTTGCTAACAGTGTGTTTGATCTATGCACTCCTTATTTGACCGGGTCTTTTCAGGAGGGTTGTTTTGGCCTTTGA 636 0.4214 MEGYGHESKKRFWHAEEDAVLTDFVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYLNPEIKRGDFSEEEEDLVIRLHNLLGNRWSLIAGRVPGRTDNQVKNFWNTYLRKKLGVKKQKSKVCAPPKSIPMVEPKSNCNSTLKGTMRNSSESNGEDEKLVQASLSGDLIDFASMHEGIMTDDFGCTFSFANSVFDLCTPYLTGSFQEGCFGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1370 211 CDD SANT 13 57 IPR001005 -
Ssu6g1370 211 CDD SANT 66 108 IPR001005 -
Ssu6g1370 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Ssu6g1370 211 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 5 205 - -
Ssu6g1370 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Ssu6g1370 211 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Ssu6g1370 211 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Ssu6g1370 211 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Ssu6g1370 211 Pfam Myb-like DNA-binding domain 13 57 IPR001005 -
Ssu6g1370 211 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Ssu6g1370 211 SMART sant 62 110 IPR001005 -
Ssu6g1370 211 SMART sant 9 59 IPR001005 -
Ssu6g1370 211 Gene3D - 64 128 - -
Ssu6g1370 211 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 205 - -
Ssu6g1370 211 Gene3D - 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1370 Ssu-Chr6 22486252 22487283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1370 2 143 MYB Transcription Factor Family AT5G40330 57.823 9.39e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1370 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1370 K09422 - pvy:116136357 202.216