Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1369 ATGGAAGGTTACAGGCGTGAATCTAAGAAGGGGTTCTGGAATGCGGAGGAAGACACGGTTCTAACTGATTACGTAAAGAAGCATGGAACGGGGAAGTGGAATCGGATTCCTACAGTGACAGGGTTGAAGAGAAGCGGCAAAAGTTGCAGACTGAGGTGGATGAATTATCTGAGTCCTAAAGTTAAACGTGGAGATTTCTCAGAGGAAGAAGAGGACCTTGTGATTCGGCTCCACAACCTCCTTGGAAATAGGTGGTCTTTGATCGCGGGCAGGATTCCGGGGAGGACAGACAACCAAGTAAAGAACTTTTGGAACACTCATTTAAGCAAGAAGCTTGGTGTTAAGAAGCAAAAAAACAAAGTTTGTGTTCCTCCAAAATCTATCCCTATAGTTGAATCAAAGGATAATTGCAATAGCACACCCAAGGGTACTATGGAGAATTCATTAGAATACAACGGCGAAAGTGAAAAGCTTGTCCAAGCAAGCATGAGCGGTGATCTAATTGACTTCTCAAGCATGCATAAGGGGATTATGACAGATGATTTTGAGTGTACATTTTCTTTTGCTAACAGTGTGTTTGATCCATGCACTCCTTATTTTACCGAGTCTTTTCAGGAGGGTTTTTTTGGCCTTTGA 636 0.4277 MEGYRRESKKGFWNAEEDTVLTDYVKKHGTGKWNRIPTVTGLKRSGKSCRLRWMNYLSPKVKRGDFSEEEEDLVIRLHNLLGNRWSLIAGRIPGRTDNQVKNFWNTHLSKKLGVKKQKNKVCVPPKSIPIVESKDNCNSTPKGTMENSLEYNGESEKLVQASMSGDLIDFSSMHKGIMTDDFECTFSFANSVFDPCTPYFTESFQEGFFGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1369 211 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 5 206 - -
Ssu6g1369 211 CDD SANT 13 57 IPR001005 -
Ssu6g1369 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Ssu6g1369 211 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Ssu6g1369 211 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Ssu6g1369 211 CDD SANT 66 108 IPR001005 -
Ssu6g1369 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Ssu6g1369 211 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 206 - -
Ssu6g1369 211 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Ssu6g1369 211 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Ssu6g1369 211 Gene3D - 10 62 - -
Ssu6g1369 211 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Ssu6g1369 211 SMART sant 9 59 IPR001005 -
Ssu6g1369 211 SMART sant 62 110 IPR001005 -
Ssu6g1369 211 Gene3D - 65 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1369 Ssu-Chr6 22428158 22429235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1369 2 152 MYB Transcription Factor Family AT5G40330 55.769 2.51e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1369 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1369 K09422 - tcc:18603898 216.083