Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1364 ATGGCTATCAGAGGCGTCGATTTCAAGTGGTATGATGGGTTTTTCTTGTCCATGCTCGCCACCAGTGTAGTTATTGTCGCCATTAATTGGAAGCGGTACCATTCTTGTACATATCCGTTGCACATATGGATTGTGGTCGACTACACTGCTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTGATTGGTACCCTGTGGTTCAGCAGTGCTAAGAACTgtTTGCCTGAAGAGGGTCAAAAATGGGGTTTTTTCATCTGGTTGCTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACACGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGgtTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCACGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCGCTGTCCAATCTCCGTGCTGAACCTGAACGATCTTCTCATTCTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGCCCAGTTCGTGCTGAAATTGCGGGGCCAGTTGGTGACACAGATAATGCGTGGGAAAATGCTGAGAACGGTGTTGTATCAATTGTGACTCAAAATGCATCATCTGGAGACCATGTCTCTTCTGTCGAATCCATTTCTGTCGGTCTTTCCTCTGCACAAAGTTAG 1152 0.4653 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEEGQKWGFFIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSHSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDTDNAWENAENGVVSIVTQNASSGDHVSSVESISVGLSSAQS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1364 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Ssu6g1364 383 Pfam Ring finger domain 234 276 IPR001841 -
Ssu6g1364 383 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Ssu6g1364 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 364 IPR044793 GO:0004842|GO:0010182
Ssu6g1364 383 CDD RING-H2_RNF111_like 234 278 - -
Ssu6g1364 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 364 - -
Ssu6g1364 383 SMART ring_2 235 275 IPR001841 -
Ssu6g1364 383 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1364 Ssu-Chr6 22309546 22317056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1364 58 363 C3H Transcription Factor Family AT3G47990 73.203 7.82e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1364 K16284 - gmx:100812016 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1364 6 22309546 22317056 Ssu6g1364 6 22309546 22317056 ECH
Ssu6g1364 6 22309546 22317056 Ssu1g2220 1 63002353 63007989 PCT