Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1362 atgaaaaacacAAACACTACTACTAGTGGTTCATCAAAACTTGATCGCAAAACTATTGAAAGGAATCGCAGAATTCACATGAAAGCTCTTTGCTTCAAGCTTGTTTCCATTATTCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGATCAGCTGGATCTAGCAGCCACGTATATAAAGCACCTGAGAGAAAGAATAGAGAAATTGAAGGGGGAGAAGGAGCAAGCCATGAACACGATGAGATCAAACTCAAACCAAAACAATGACAGAATTTTCAATATTGGCTCTCAGTTGCCTCTACTTGAGATAAGGGACTTGGGCTCCGGCATTGAAGTGATGTTGATAAGTGGGTTGAATAAGAACTTCATGCTCTACGAAATAATTAGTGTCCTTGAGGAAGAGGGTGCTGAAGTTGTCACTGCTAACTTCTCTACTGTTGCTGATAAGATCTTTTACACCGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACAAGGGTATATCAAAGGCTTCAGGAGTTGATTGCACCACCAGAAATGTGGGAGTACATATCGTGA 579 0.4093 MKNTNTTTSGSSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMNTMRSNSNQNNDRIFNIGSQLPLLEIRDLGSGIEVMLISGLNKNFMLYEIISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPPEMWEYIS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1362 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 84 IPR036638 GO:0046983
Ssu6g1362 192 Gene3D - 2 96 IPR036638 GO:0046983
Ssu6g1362 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 182 IPR015660 GO:0003700|GO:0006357
Ssu6g1362 192 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Ssu6g1362 192 Coils Coil 63 90 - -
Ssu6g1362 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Ssu6g1362 192 PANTHER TRANSCRIPTION FACTOR BHLH162 8 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1362 Ssu-Chr6 22240432 22241377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1362 1 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.684 1.48e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1362 HLH 6.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1362 - - gmx:100811485 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1362 6 22240432 22241377 Ssu1g2218 1 62895925 62897639 PCT