Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1359 ATGACTCAAAGGGATCGCCGCACCCTATCATTCCCGGCGGTTCACCCTTGCGACGGCATATCTCCGGCCACACTTCTCGCCTCTCTAATCACACTCTCACAGTCCATATGCAACTACCAACCCGAACCATTCCCCACCCAACGTCAAAACGCAAGAGAAACAATGCGCCAAATCGGCATTGTCTTGATATTCCTTCAAGAAATTCGAGACAGCGGGCTACTCGTCCCGACTCCACCAGTCCTCTGCCTCTTGGAGCTCCACTTCACCTTACAAAAGATCCACTTCCTGATGCAAGATTGCACCCTCGAAGGCGCTCGCCTCCTCATGCTCGCGAAATCGCAACACGTGGCGTCCCAGTTCCGCGCCCTCGTTCGCGCCATGGCCACCTCCCTCGACGTCCTGCCTCTTCACAAGTTCGACGTGTCCGGCGAGGTGAAGGAGCTGGCGGAGTTAGTAACCAAACAAGCGAGGAAAGCCAAGTTCGAAGTGGACCCCACCGACGCGCGTGCCGGCGAAACCCTCCACACGGTTCTCCGCCAGTTCGCGAGGGGAACCGAACCGGACCTGAGTTCCATGAAAGGAATCATCGACTACCTCGAGATTAAAACCTGGACGGATTGTAACAGAGAGATTAAATTCCTAGAAGAAGAAATCAACTTAGAGTGTCGCGATCGCGGGGAGCGAGAGGTTCCTCTATTGAGTAGCTTGGTAGGGTTCTTGTGTTACTGCAGAGGAGTAATATTCGAAACTATAGAAGACACCAATCAAACCGAAGGGAGATGCAGCACGGAGATAATAACGTTGACGTTGTTAACGTCCGTTAACCCGGAGGATTTCCGTTGCCCGATTTCTCTTGACTTGATGACGGATCCGGTAACGGTGTCAACAGGTCAGACCTACGACCGAGCCTCCATTCGGAAATGGCTCAAAGCTGGGAACACGACGTGTCCCAAAACAGGGGAGAAGCTAACCAACACAGAGTTGGTCCCCAACACAACGCTCAAGAGGCTCATCCAACAGTTCTGCGCCGACAACGGCATTTCCCTCGCCGACAACTCATGTAGCCATGCCCGCAACATCGTTGCAGCAGGCAGTCCCGCGGCGGCGCACGCCGTACAATTCCTCGCGTGGTTTCTCACGCGGAGGCTCGCGTTCGGAACGGACGAACAGAAGCACAAGGCCGCGCACGAGATTCGCGTGCTTGCCAGAACCAGCATTTTCAACAGGGCGTGTTTGATTGAAATGGGAACAGTGCCTCCTCTGTTGGACCTTTTGGCCTCTGCCTCAAACGATAAATCCACGCAAGAGAACGCAGTCTCTGCCTTACTGAAGCTCTCTAAACATGCGAATGGCCCAAAAAACATCATAAACAGTGGGGGCCTAACCGTAATTCTCTCGGTGTTAAAAAATGGACTCGGCCTCGTAGCCCGCCAAGTCGCGGCTGCTACCGTATTTTATCTCTCTTCGGTGAAAGAGTACCGGAAATTAATAGGCGAAAACCCGGAGGTGATTCCGGCGTTGGTGGAGTTGGTTAAGGAAGGAACAACCTGCGGGAGAAAGAACGCAGTGGTTGCGATTTTTGGTTTGCTTTTGCTTCCTGGGAATCACCAAAGGGTTCTTTCTGCTGGGGCGGTTCCCGCGCTGCTTGATATTTTGGCTTCTTCGGATAAGGACGAACTTGTGGCCGAATCTCTGGCCGTTCTCGCAACCCTGTCTGAGAATGTTGATGGGGCGCGTGCGATTCTGCAAGGCTCGGCGTTGCCGATGATTACGGGGATGTTGAAATCTGCCACGTCACGCGCGGGGAAAGAGCACTCTGCTTCCATCTTGTTGTCGCTTTGCGTCAATGTTGGCGTGGAGGTGGTGGCGGTTCTCGCCAAGGACCCTTCGCTCATGCCTCTGCTTTATTCGCTTCTCACGGATGGGACTTCTCACGCCGCAAAGAAAGCGCGGTTCCTCATCAAAGTTATACAAGATTTCAACGAGACTAGAAGTTCTGGACTCAAGGGTTCCTCGCTTCCGCAGGAACGATCGCTTCACGTTTGGTGA 2049 0.5354 MTQRDRRTLSFPAVHPCDGISPATLLASLITLSQSICNYQPEPFPTQRQNARETMRQIGIVLIFLQEIRDSGLLVPTPPVLCLLELHFTLQKIHFLMQDCTLEGARLLMLAKSQHVASQFRALVRAMATSLDVLPLHKFDVSGEVKELAELVTKQARKAKFEVDPTDARAGETLHTVLRQFARGTEPDLSSMKGIIDYLEIKTWTDCNREIKFLEEEINLECRDRGEREVPLLSSLVGFLCYCRGVIFETIEDTNQTEGRCSTEIITLTLLTSVNPEDFRCPISLDLMTDPVTVSTGQTYDRASIRKWLKAGNTTCPKTGEKLTNTELVPNTTLKRLIQQFCADNGISLADNSCSHARNIVAAGSPAAAHAVQFLAWFLTRRLAFGTDEQKHKAAHEIRVLARTSIFNRACLIEMGTVPPLLDLLASASNDKSTQENAVSALLKLSKHANGPKNIINSGGLTVILSVLKNGLGLVARQVAAATVFYLSSVKEYRKLIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPGNHQRVLSAGAVPALLDILASSDKDELVAESLAVLATLSENVDGARAILQGSALPMITGMLKSATSRAGKEHSASILLSLCVNVGVEVVAVLAKDPSLMPLLYSLLTDGTSHAAKKARFLIKVIQDFNETRSSGLKGSSLPQERSLHVW 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1359 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 349 IPR013083 -
Ssu6g1359 682 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Ssu6g1359 682 SUPERFAMILY RING/U-box 276 348 - -
Ssu6g1359 682 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Ssu6g1359 682 Gene3D - 524 665 IPR011989 -
Ssu6g1359 682 PANTHER OS07G0532750 PROTEIN 3 667 - -
Ssu6g1359 682 CDD RING-Ubox_PUB 279 321 IPR045210 -
Ssu6g1359 682 PANTHER U BOX DOMAIN-CONTAINING 3 667 - -
Ssu6g1359 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Ssu6g1359 682 Gene3D - 367 523 IPR011989 -
Ssu6g1359 682 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Ssu6g1359 682 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Ssu6g1359 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Ssu6g1359 682 SUPERFAMILY ARM repeat 382 657 IPR016024 -
Ssu6g1359 682 SMART arm_5 404 447 IPR000225 GO:0005515
Ssu6g1359 682 SMART arm_5 448 489 IPR000225 GO:0005515
Ssu6g1359 682 SMART arm_5 532 573 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1359 Ssu-Chr6 22190007 22192055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1359 2 682 U-box Gene Family AT1G60190 40.029 3.74e-168 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1359 - - gmx:100787869 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2212 1 62761849 62763399 Ssu6g1359 6 22190007 22192055 ECH
Ssu6g1359 6 22190007 22192055 Ssu6g1359 6 22190007 22192055 ECH