Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1358 ATGGCATCTCGCAGACTTTCCAGGCTActctctcgctctctctctGCTTCCCAATCTTCTGGAGCTGCTTCTCTGCTTCACTCACTGGGTAGAAACTCTGGAGCGTGGAGAAACATCAACAGGTTTAGCACGGCTGCAGCAGTTGAGGACCTAATCACTCCGCAAGTTTCAATACGTTATACACAGCACCTGATAAATGGGCAATTTGTGGATGCTGCATCAGGAAAAACATTTCCAACGTATGACCCGCGCACAGGAGAAGTGATTGCTAATGTTGCTGAAGGGGATGTTGAAGACATCAATCGTGCAGTATCGGCAGCTCGCAAGGCCTTTGATGAAGGACCTTGGCCAAAAATGACTGCATATGAAAGAAGTCGGATATTGCTGCGCTTTGCTGATTTGGTTCAGAAACACAGTGATGAGCTTGCCGCTCTGGAGACATGGGACAATGGAAAGCCTTATGAACAGGCTGCCAAGAGTGAATTGCCAATGCTTGTGCGTTTATTTCACTATTATGCTGgTTGGGCAGATAAAATTCATGGGCTGACAGTCCCAGCTGATGGAGATTATCATGTCCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAACTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTCCTAAAGACTGCTGAGCAAACACCACTAACAGCTCTCTTTGTGGCAAACCTATTTCATGAGGCTGGTCTTCCCGAAGGTGTTCTGAATGTAGTTTCTGGGTATGGTCCAACTGCTGGTGCAGCTCTTGCGAGTCATATGGATGTGGACAAGCTAGCATTCACTGGTTCAACAGACACTGGAAAAATTGTACTTGAATTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCACCTTTCATAGTATGTGAGGATGCTGATGTTGACAAGGCTGTTGAACTTGCACACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGCTGTGCCGGGTCTCGTACCTTTGTACACGAGCGTGTCTATGATGAGTTCTTGGAGAAATCAAAGAAACGGGCTTTGAGACGTGTTGTTGGTGATCCATTCAAGAAAGGTGTTGAACAAGGTCCTCAGATTGACGTGGAACAATTTGAGAAAGTCCTTAGGTACATAAGGTCCGGAATTGAAAGCAATGCCACCCTCGAATGTGGGGGTCAGAGATTGGGCTCAAAAGGCTTCTTTGTCCAGCCAACTGTGTTTTCAAATGTTCAGGATGACATGTTGATAGCAAAAGATGAAATATTCGGCCCAGTTCAGTCCATCTTGAAATTCAAGGACATTGACGAAGTAATACGACGGGCAAATGCAACACGTTATGGTCTAGCGGCAGGTGTGTTTACTAAGAACGTGAGCACGGCCAACACTTTGATGCGGGCACTGAGAGCTGGAACTGTGTGGATTAATTGCTTTGACGTCTTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGCGGTATAGGCAGGGAGAAAGGAATCTACAGTCTTCACAACTACCTGCAGGTGAAAGCTGTTGTCTCACCATTGAAGAATCCTGCGTGGCTATAA 1626 0.452 MASRRLSRLLSRSLSASQSSGAASLLHSLGRNSGAWRNINRFSTAAAVEDLITPQVSIRYTQHLINGQFVDAASGKTFPTYDPRTGEVIANVAEGDVEDINRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVQKHSDELAALETWDNGKPYEQAAKSELPMLVRLFHYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALFVANLFHEAGLPEGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTDTGKIVLELAARSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDVEQFEKVLRYIRSGIESNATLECGGQRLGSKGFFVQPTVFSNVQDDMLIAKDEIFGPVQSILKFKDIDEVIRRANATRYGLAAGVFTKNVSTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVSPLKNPAWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1358 541 Pfam Aldehyde dehydrogenase family 69 531 IPR015590 GO:0016491
Ssu6g1358 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Ssu6g1358 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Ssu6g1358 541 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 28 541 - -
Ssu6g1358 541 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491
Ssu6g1358 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Ssu6g1358 541 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 28 541 - -
Ssu6g1358 541 CDD ALDH_F2BC 58 532 - -
Ssu6g1358 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 531 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1358 Ssu-Chr6 22168401 22173250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1358 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 78.782 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1358 K00128 - gmx:100811501 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2211 1 62735877 62739519 Ssu6g1358 6 22168401 22173250 ECH
Ssu6g1358 6 22168401 22173250 Ssu6g1358 6 22168401 22173250 ECH